Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007001.1 Hibiscus syriacus cultivar Beakdansim tig00018069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104959
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Found at i:398 original size:17 final size:17
Alignment explanation
Indices: 378--412 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
368 AATAGGGATG
*
378 TAAAATGAAAAACAAAA
1 TAAAATAAAAAACAAAA
*
395 TAAAATAAAAAAGAAAA
1 TAAAATAAAAAACAAAA
412 T
1 T
413 TAGTATCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (17 bp):
TAAAATAAAAAACAAAA
Found at i:2605 original size:28 final size:30
Alignment explanation
Indices: 2532--2599 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 30
2522 ACCGTTGACC
2532 GGGTGTTATTTTAGTAATTAATTCGAAATA
1 GGGTGTTATTTTAGTAATTAATTCGAAATA
* *
2562 -GGTGCTATTTTAGTAATTAATT-TAAA-A
1 GGGTGTTATTTTAGTAATTAATTCGAAATA
2589 GGGTGTTATTT
1 GGGTGTTATTT
2600 CTGTAAAATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 1 0.03
28 12 0.35
29 21 0.62
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (30 bp):
GGGTGTTATTTTAGTAATTAATTCGAAATA
Found at i:3504 original size:2 final size:2
Alignment explanation
Indices: 3499--3527 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3489 ATAAAAAATA
3499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3528 CGGACATAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4938 original size:15 final size:15
Alignment explanation
Indices: 4916--4951 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
4906 TCATAACTTC
4916 AAAC-TTTCCAAAAT
1 AAACATTTCCAAAAT
*
4930 CAACATTTCCAAAAT
1 AAACATTTCCAAAAT
4945 AAACATT
1 AAACATT
4952 AGATTCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (15 bp):
AAACATTTCCAAAAT
Found at i:5899 original size:24 final size:24
Alignment explanation
Indices: 5871--5942 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
5861 GTAAACAAAG
5871 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAAAACAGAATTC
* * *
5895 ATATCAGATATC-AAATAGAATCC
1 ATATCAGAAATCAAAACAGAATTC
* *
5918 ATATCAGAAATTAGAACAGAATTC
1 ATATCAGAAATCAAAACAGAATTC
5942 A
1 A
5943 GGTAATGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 19 0.49
24 20 0.51
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (24 bp):
ATATCAGAAATCAAAACAGAATTC
Found at i:5920 original size:23 final size:24
Alignment explanation
Indices: 5871--5939 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 24
5861 GTAAACAAAG
*
5871 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAAAACAGAATCC
* *
5895 ATATCAGATATC-AAATAGAATCC
1 ATATCAGAAATCAAAACAGAATCC
* *
5918 ATATCAGAAATTAGAACAGAAT
1 ATATCAGAAATCAAAACAGAAT
5940 TCAGGTAATG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 19 0.51
24 18 0.49
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.23
Consensus pattern (24 bp):
ATATCAGAAATCAAAACAGAATCC
Found at i:5954 original size:47 final size:48
Alignment explanation
Indices: 5871--5976 Score: 110
Period size: 47 Copynumber: 2.2 Consensus size: 48
5861 GTAAACAAAG
* * *
5871 ATATCAGAAATCAAAACAGAATTCATATCAGATATCA-AATAGAATCC
1 ATATCAGAAATCAAAACAGAATTCAGATAAGATATCATAACAGAATCC
* * * *
5918 ATATCAGAAATTAGAACAGAATTCAGGTAATG-TATCATAACAGAATTC
1 ATATCAGAAATCAAAACAGAATTCAGATAA-GATATCATAACAGAATCC
5966 A-AGTCAGAAAT
1 ATA-TCAGAAAT
5977 AATATAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
47 31 0.63
48 18 0.37
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (48 bp):
ATATCAGAAATCAAAACAGAATTCAGATAAGATATCATAACAGAATCC
Found at i:8129 original size:26 final size:26
Alignment explanation
Indices: 8083--8144 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 26
8073 TTTGTTCAGG
8083 TCGGGTCGGGTTTTTTAA-GTGATAT
1 TCGGGTCGGGTTTTTTAAGGTGATAT
* *
8108 TTGGGTCGAGTTTTTTTAAGTGTGATAT
1 TCGGGTCG-GGTTTTTTAAG-GTGATAT
8136 TCGGGTCGG
1 TCGGGTCGG
8145 ATCGGGTCGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 7 0.23
26 9 0.29
27 1 0.03
28 14 0.45
ACGTcount: A:0.15, C:0.08, G:0.34, T:0.44
Consensus pattern (26 bp):
TCGGGTCGGGTTTTTTAAGGTGATAT
Found at i:8267 original size:244 final size:245
Alignment explanation
Indices: 7868--8601 Score: 1025
Period size: 244 Copynumber: 2.9 Consensus size: 245
7858 GGTCGGATTG
* * *
7868 GTTTTTTTAAGTGTGATATTCGGTCGGGTCGGGTCAGGTTCGGGTTTAGGGTGAAAAAATCTGGA
1 GTTTTTTTAAGTGTGATA-T---TCGGGTCGGATC-GGGTCGGGTTTAGGGTGAAAAAAACTGGA
* * *
7933 CCGACCTGAAAATATATATAATTCAGGTCGGGTCGGATTAAGTCATTGTTTTTATTAAATAAAAA
61 CCGACCCGAAAATATATATAATTCGGGTC-GGTCGGATTAAGTCACTGTTTTTATTAAATAAAAA
*
7998 TAATTTTTTATTATTTCAGGTCGGGTTGGGTCGGATTTCTAATTCATATATTCGGGTCGGGTCGG
125 TAATTTTTTATTATTTCAGGTCGGGTCGGGTCGGATTTCTAATTCATATATTC--GTCGGGTCGG
8063 ATGAAAC-TT-TTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGATA-T-TTGGGTCGA
188 ATGAAACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGATACTGTTGGGTCGA
8117 GTTTTTTTAAGTGTGATATTCGGGTCGGATCGGGTCGGGTTTAGGGTGAAAAAAACTGGACCGAC
1 GTTTTTTTAAGTGTGATATTCGGGTCGGATCGGGTCGGGTTTAGGGTGAAAAAAACTGGACCGAC
8182 CCGAAAATATATATAATTCGGGTCGAGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATAATT
66 CCGAAAATATATATAATTCGGGTCG-GTCGGATTAAGTCACTGTTTTTATTAAATAAAAATAATT
* *
8247 TTTTATTATTTCAAGTCGGGTCGGGTTGGATTTCTAATTCATATATTCTAGTCGGGTCGGATGAA
130 TTTTATTATTTCAGGTCGGGTCGGGTCGGATTTCTAATTCATATATTC--GTCGGGTCGGATGAA
* * *
8312 ACTTTATTTTGTTCGGGTCAGGTCGGGTTTTTTAAGTGTGATATTCGGCTCGAGTTGGGTCGG
193 ACTTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAA--GTGATA-----CT---GTTGGGTCGA
* * * *
8375 GTTTTTTTAAGTGCGATATTCGGGTCGGATCGGGTCTGGTTTAGGGTG-AAAAAACCGGATCGAC
1 GTTTTTTTAAGTGTGATATTCGGGTCGGATCGGGTCGGGTTTAGGGTGAAAAAAACTGGACCGAC
*
8439 CCAAAAATATATATAATTCGGGTCGGATCGGATTAAGTCACTGTTTTTATTAAATAAAAATAATT
66 CCGAAAATATATATAATTCGGGTCGG-TCGGATTAAGTCACTGTTTTTATTAAATAAAAATAATT
* * *
8504 TTTTATTATTTCGGGTAGGGTCGGGTCAGATTTCTAATTCATATA-T--TCGGGTCGGATGAAAC
130 TTTTATTATTTCAGGTCGGGTCGGGTCGGATTTCTAATTCATATATTCGTCGGGTCGGATGAAAC
*
8566 TTTATTTTGTTCAGGTCGAGTCGGGTTTTTTAAGTG
195 TTTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTG
8602 TGATATTCGG
Statistics
Matches: 442, Mismatches: 27, Indels: 31
0.88 0.05 0.06
Matches are distributed among these distances:
243 1 0.00
244 154 0.35
245 13 0.03
246 27 0.06
248 7 0.02
249 18 0.04
250 3 0.01
252 46 0.10
254 1 0.00
256 2 0.00
257 116 0.26
258 54 0.12
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (245 bp):
GTTTTTTTAAGTGTGATATTCGGGTCGGATCGGGTCGGGTTTAGGGTGAAAAAAACTGGACCGAC
CCGAAAATATATATAATTCGGGTCGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATAATTT
TTTATTATTTCAGGTCGGGTCGGGTCGGATTTCTAATTCATATATTCGTCGGGTCGGATGAAACT
TTATTTTGTTCAGGTCGGGTCGGGTTTTTTAAGTGATACTGTTGGGTCGA
Found at i:8410 original size:38 final size:38
Alignment explanation
Indices: 8332--8416 Score: 111
Period size: 38 Copynumber: 2.3 Consensus size: 38
8322 GTTCGGGTCA
* *
8332 GGTCGGG-TTTTTTAAGTGTGATATTCGGCTCGAGTTG
1 GGTCGGGTTTTTTTAAGTGCGATATTCGGCTCGAGTCG
*
8369 GGTCGGGTTTTTTTAAGTGCGATATTCGGGTCG-GATCG
1 GGTCGGGTTTTTTTAAGTGCGATATTCGGCTCGAG-TCG
*
8407 GGTCTGGTTT
1 GGTCGGGTTT
8417 AGGGTGAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
37 8 0.19
38 34 0.81
ACGTcount: A:0.12, C:0.12, G:0.36, T:0.40
Consensus pattern (38 bp):
GGTCGGGTTTTTTTAAGTGCGATATTCGGCTCGAGTCG
Found at i:9033 original size:17 final size:17
Alignment explanation
Indices: 9011--9043 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9001 AAAATGAAAA
9011 TTTAATATTTTT-TAATT
1 TTTAAT-TTTTTATAATT
9028 TTTAATTTTTTATAAT
1 TTTAATTTTTTATAAT
9044 ATATTACTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTAATTTTTTATAATT
Found at i:9261 original size:18 final size:16
Alignment explanation
Indices: 9218--9263 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
9208 TATGGAATTG
9218 GATTCCAATTCCTACA
1 GATTCCAATTCCTACA
**
9234 GATTATAATTCCTTCACA
1 GATTCCAATTCC-T-ACA
9252 GATTCCAATTCC
1 GATTCCAATTCC
9264 CTCATAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 10 0.42
17 1 0.04
18 13 0.54
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (16 bp):
GATTCCAATTCCTACA
Found at i:11524 original size:13 final size:13
Alignment explanation
Indices: 11506--11550 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
11496 ATTTCAAAAC
11506 TTTCATATTTCAT
1 TTTCATATTTCAT
*
11519 TTTCATCTTTCAT
1 TTTCATATTTCAT
*
11532 TTTCACA-TTCAT
1 TTTCATATTTCAT
*
11544 TTACATA
1 TTTCATA
11551 ACCAATACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTCATATTTCAT
Found at i:16748 original size:16 final size:16
Alignment explanation
Indices: 16724--16787 Score: 101
Period size: 16 Copynumber: 4.0 Consensus size: 16
16714 ATAAGTAAGA
* *
16724 TGCACTCACATGATGT
1 TGCACTCACCTGATGC
*
16740 TGTACTCACCTGATGC
1 TGCACTCACCTGATGC
16756 TGCACTCACCTGATGC
1 TGCACTCACCTGATGC
16772 TGCACTCACCTGATGC
1 TGCACTCACCTGATGC
16788 CTCATTAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.20, C:0.33, G:0.19, T:0.28
Consensus pattern (16 bp):
TGCACTCACCTGATGC
Found at i:24290 original size:32 final size:32
Alignment explanation
Indices: 24244--24312 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
24234 TAGATGCTTA
* * *
24244 GGTATGCTCTTAGGCCCTAAACTACTCCCTTG
1 GGTAGGCTCCTAGGCCCCAAACTACTCCCTTG
** *
24276 GGTAGGCTCCTAGGCCCCAAGGTACTCCTTTG
1 GGTAGGCTCCTAGGCCCCAAACTACTCCCTTG
24308 GGTAG
1 GGTAG
24313 ACTTTAAGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.17, C:0.29, G:0.26, T:0.28
Consensus pattern (32 bp):
GGTAGGCTCCTAGGCCCCAAACTACTCCCTTG
Found at i:34275 original size:17 final size:16
Alignment explanation
Indices: 34253--34309 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
34243 TCTTTAAACT
34253 TTTTTTCTTTTATTTTG
1 TTTTTT-TTTTATTTTG
*
34270 TTTTTTTTTTATTTTT
1 TTTTTTTTTTATTTTG
34286 TTATTTTTTTTATTTTG
1 TT-TTTTTTTTATTTTG
*
34303 ATTTTTT
1 TTTTTTT
34310 GATTTTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
16 16 0.44
17 20 0.56
ACGTcount: A:0.09, C:0.02, G:0.04, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTTATTTTG
Found at i:34276 original size:8 final size:9
Alignment explanation
Indices: 34261--34302 Score: 54
Period size: 8 Copynumber: 5.0 Consensus size: 9
34251 CTTTTTTTCT
34261 TTTATTTTG
1 TTTATTTTG
34270 TTT-TTTT-
1 TTTATTTTG
34277 TTTATTTT-
1 TTTATTTTG
*
34285 TTTATTTTT
1 TTTATTTTG
34294 TTTATTTTG
1 TTTATTTTG
34303 ATTTTTTGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 3 0.10
8 16 0.53
9 11 0.37
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.86
Consensus pattern (9 bp):
TTTATTTTG
Found at i:34284 original size:9 final size:9
Alignment explanation
Indices: 34252--34301 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
34242 CTCTTTAAAC
*
34252 TTTTTTTCT
1 TTTTTTTAT
*
34261 TTTATTTTGT
1 TTT-TTTTAT
*
34271 TTTTTTTTT
1 TTTTTTTAT
34280 ATTTTTTTAT
1 -TTTTTTTAT
34290 TTTTTTTAT
1 TTTTTTTAT
34299 TTT
1 TTT
34302 GATTTTTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 20 0.56
10 16 0.44
ACGTcount: A:0.08, C:0.02, G:0.02, T:0.88
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:34286 original size:23 final size:22
Alignment explanation
Indices: 34253--34315 Score: 56
Period size: 23 Copynumber: 2.8 Consensus size: 22
34243 TCTTTAAACT
* * *
34253 TTTTTTCTTTTAT-TTTGTTTT
1 TTTTTTATTTTTTATTTTTTTT
34274 TTTTTTATTTTTTTATTTTTTTT
1 TTTTTTA-TTTTTTATTTTTTTT
* *
34297 ATTTTGATTTTTTGATTTT
1 TTTTTTATTTTTT-ATTTT
34316 CTTACTAACC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 6 0.18
22 11 0.32
23 17 0.50
ACGTcount: A:0.10, C:0.02, G:0.05, T:0.84
Consensus pattern (22 bp):
TTTTTTATTTTTTATTTTTTTT
Found at i:37512 original size:20 final size:20
Alignment explanation
Indices: 37487--37528 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
37477 AAAGTCTCCA
37487 AACACAAAT-CAATTATCTAC
1 AACACAAATGCAATTAT-TAC
*
37507 AACACAAGTGCAATTATTAC
1 AACACAAATGCAATTATTAC
37527 AA
1 AA
37529 ATCAACATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.50, C:0.21, G:0.05, T:0.24
Consensus pattern (20 bp):
AACACAAATGCAATTATTAC
Found at i:46269 original size:17 final size:16
Alignment explanation
Indices: 46247--46280 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
46237 TAAAAACAGT
46247 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
46264 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
46280 A
1 A
46281 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:68165 original size:24 final size:26
Alignment explanation
Indices: 68137--68191 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
68127 TTGGTGTTGG
*
68137 TTATGGTTTT-AATGAA-ACGTTATT
1 TTATGGTTTTGAATGAAGAAGTTATT
* *
68161 TTATGTTTTTGAATGAAGAAGTTTTT
1 TTATGGTTTTGAATGAAGAAGTTATT
68187 TTATG
1 TTATG
68192 CTTAATATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 9 0.35
25 6 0.23
26 11 0.42
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.53
Consensus pattern (26 bp):
TTATGGTTTTGAATGAAGAAGTTATT
Found at i:95203 original size:178 final size:178
Alignment explanation
Indices: 94904--95260 Score: 714
Period size: 178 Copynumber: 2.0 Consensus size: 178
94894 AATATGAACA
94904 CACAGATGTGCAATGACATTGCGAGTTTTTGCCAAGGCGATGAGGAATCTATGTATGAATGCTGG
1 CACAGATGTGCAATGACATTGCGAGTTTTTGCCAAGGCGATGAGGAATCTATGTATGAATGCTGG
94969 GAGAAATATAAAAGCCGACTTCGCAAGTGCGTGAACCACAGATTCCATGACTGGACTCAAGTCAT
66 GAGAAATATAAAAGCCGACTTCGCAAGTGCGTGAACCACAGATTCCATGACTGGACTCAAGTCAT
95034 GATGTTTTATAACGGAGTCAACGCACCTACTCGAATGATGTTAGATGC
131 GATGTTTTATAACGGAGTCAACGCACCTACTCGAATGATGTTAGATGC
95082 CACAGATGTGCAATGACATTGCGAGTTTTTGCCAAGGCGATGAGGAATCTATGTATGAATGCTGG
1 CACAGATGTGCAATGACATTGCGAGTTTTTGCCAAGGCGATGAGGAATCTATGTATGAATGCTGG
95147 GAGAAATATAAAAGCCGACTTCGCAAGTGCGTGAACCACAGATTCCATGACTGGACTCAAGTCAT
66 GAGAAATATAAAAGCCGACTTCGCAAGTGCGTGAACCACAGATTCCATGACTGGACTCAAGTCAT
95212 GATGTTTTATAACGGAGTCAACGCACCTACTCGAATGATGTTAGATGC
131 GATGTTTTATAACGGAGTCAACGCACCTACTCGAATGATGTTAGATGC
95260 C
1 C
95261 TCGAAAAATG
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 179 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (178 bp):
CACAGATGTGCAATGACATTGCGAGTTTTTGCCAAGGCGATGAGGAATCTATGTATGAATGCTGG
GAGAAATATAAAAGCCGACTTCGCAAGTGCGTGAACCACAGATTCCATGACTGGACTCAAGTCAT
GATGTTTTATAACGGAGTCAACGCACCTACTCGAATGATGTTAGATGC
Done.