Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007003.1 Hibiscus syriacus cultivar Beakdansim tig00018075_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 30601
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:2964 original size:5 final size:5

Alignment explanation


    Indices: 2954--2986  Score: 59
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       2944 CCACGACCAC

                                                    
       2954 GACGA GACGA GACGA GACGA GACGA GACG- GACG
          1 GACGA GACGA GACGA GACGA GACGA GACGA GACG

       2987 GCGGCGGTGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   4    4  0.14
   5   24  0.86

ACGTcount: A:0.36, C:0.21, G:0.42, T:0.00


Consensus pattern (5 bp):   
GACGA

Found at i:7382 original size:31 final size:32

Alignment explanation


    Indices: 7336--7408  Score: 87
    Period size: 31  Copynumber: 2.3  Consensus size: 32

       7326 TAAAGTAATA

                 *    *          *   *      
       7336 ATTTTATTACAAATCGATAACGTTAGTGACT-
          1 ATTTTGTTACCAATCGATAACATTAATGACTG

                                *           
       7367 ATTTTGTTACCAATCGATAATATTAATGACTG
          1 ATTTTGTTACCAATCGATAACATTAATGACTG

                       
       7399 A-TTTGTTACC
          1 ATTTTGTTACC

       7409 TTTAAAACTT


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  31   35  0.97
  32    1  0.03

ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41


Consensus pattern (32 bp):   
ATTTTGTTACCAATCGATAACATTAATGACTG
Done.