genome.fa.s7004.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007004.1 Hibiscus syriacus cultivar Beakdansim tig00018081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155045

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
808--1109	120	2.5	121	85	6	403	31	16	27	23	1.96
1834--2020	36	5.2	36	86	3	218	36	22	19	20	1.95
2400--2974	55	10.5	54	77	10	453	31	18	25	25	1.98
2391--2929	110	4.9	107	79	7	511	31	18	25	23	1.97
2400--2921	274	1.9	270	81	10	636	31	18	25	24	1.97
2391--3034	165	3.9	163	81	9	547	31	18	25	24	1.97
11656--11720	24	3.0	22	76	17	64	30	18	26	24	1.98
13284--13373	23	3.9	23	91	0	135	17	27	25	28	1.98
15530--15567	20	1.9	20	100	0	76	36	10	28	23	1.88
15756--15805	22	2.3	22	96	0	91	42	4	0	54	1.19
26993--27222	36	6.3	36	76	9	182	47	3	6	42	1.46
27023--27209	38	5.1	38	78	5	154	48	4	6	40	1.48
28446--28577	2	70.5	2	80	15	140	41	1	0	56	1.08
28578--28638	16	4.0	15	77	16	63	13	6	4	75	1.16
28685--28779	41	2.5	39	77	12	108	18	8	1	71	1.17
28684--28774	9	9.7	9	72	21	53	19	7	1	71	1.17
28647--28777	49	2.7	47	74	19	115	19	6	0	72	1.12
28647--28777	50	2.7	48	77	11	131	19	6	0	72	1.12
34986--35027	21	2.0	20	86	4	57	40	7	14	38	1.73
36525--36566	21	2.0	20	86	4	57	40	7	14	38	1.73
38064--38105	21	2.0	20	86	4	57	40	7	14	38	1.73
40493--40524	4	8.0	4	100	0	64	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52822--52855	13	2.6	13	95	0	59	32	26	38	2	1.71
53582--53615	10	3.4	10	87	0	50	2	11	14	70	1.27
55767--55818	26	2.0	26	96	0	95	40	3	17	38	1.68
56922--56999	31	2.5	32	79	6	88	43	3	11	41	1.59
66206--66426	48	4.6	48	86	0	307	23	15	26	34	1.94
70546--70588	23	1.9	22	90	4	68	72	4	0	23	1.04
74591--74640	19	2.6	19	93	0	82	26	12	30	32	1.92
84168--84195	2	14.0	2	100	0	56	50	0	0	50	1.00
84876--85121	83	3.0	83	84	3	316	26	19	22	31	1.98
85358--85700	170	2.0	170	89	1	526	25	17	23	33	1.96
85789--85819	14	2.2	14	100	0	62	22	12	35	29	1.91
93276--93355	39	2.1	39	85	4	108	21	20	27	31	1.98
97825--97858	2	17.0	2	100	0	68	50	0	0	50	1.00
105355--105393	20	1.9	21	94	5	71	46	25	15	12	1.81
105322--106527	182	6.6	182	87	1	1657	44	13	15	27	1.83
105321--106527	365	3.3	362	87	2	1614	44	13	15	27	1.83
105322--106527	547	2.2	544	90	2	1896	44	13	15	27	1.83
106915--106953	19	2.1	19	95	4	71	46	0	17	35	1.49
107210--107248	18	2.2	19	86	9	55	48	2	7	41	1.45
108213--108268	24	2.5	22	77	13	60	41	1	7	50	1.40
108930--108968	18	2.2	18	90	9	62	56	0	35	7	1.28
110433--110481	19	2.6	19	90	3	73	30	2	10	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110825--112322	199	7.5	199	94	0	2599	41	15	15	28	1.86
112663--112720	15	3.7	15	83	6	71	22	50	1	25	1.59
115407--115443	18	2.1	18	90	10	58	40	0	0	59	0.97
115444--115542	3	34.0	3	70	17	66	67	1	3	28	1.12
115443--115548	39	2.6	39	75	15	99	68	1	2	26	1.13
115469--115540	27	2.8	25	82	12	85	68	1	1	29	1.07
115439--115540	30	3.8	25	75	20	82	67	0	2	28	1.11
115441--115553	19	6.3	18	72	15	74	69	1	2	26	1.12
115444--115551	30	4.1	25	74	17	78	68	1	2	26	1.13
116403--116465	3	21.0	3	84	12	85	61	0	0	38	0.96
116405--116473	21	3.3	21	84	9	97	63	0	0	36	0.94
116404--116477	9	7.5	10	82	14	68	64	0	0	35	0.94
116716--116774	17	3.4	17	70	25	59	16	23	10	49	1.77
116716--116810	40	2.5	38	88	8	140	17	23	10	48	1.78
116751--117706	113	8.4	114	87	5	1213	28	18	13	39	1.89
117231--117706	114	4.2	114	93	1	816	28	17	14	40	1.88
118133--118187	22	2.5	22	84	0	74	34	14	16	34	1.89
119581--119775	76	2.6	76	94	1	338	29	16	17	36	1.92
119892--119960	36	1.9	35	85	2	93	31	21	14	31	1.93
123147--123203	13	4.5	13	82	8	64	0	17	0	82	0.67
123140--123230	26	3.5	25	83	8	85	2	16	3	78	0.99
123162--123206	4	11.8	4	85	4	58	0	15	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123147--123206	12	5.1	12	88	10	88	0	16	0	83	0.65
123143--123206	22	2.9	22	90	6	94	0	17	0	82	0.66
123166--123238	27	3.0	25	84	13	98	2	13	6	76	1.09
123141--123225	34	2.4	35	79	16	86	1	15	3	80	0.92
126727--126780	14	3.8	14	85	2	63	51	9	14	24	1.71
128974--129025	20	2.6	19	79	8	59	65	1	0	32	1.04
128882--129111	120	1.9	119	81	6	277	46	7	6	39	1.59
129175--129209	16	2.2	16	90	10	54	40	0	0	60	0.97
129210--129308	3	34.0	3	73	15	75	68	1	1	29	1.03
129235--129308	26	2.8	26	84	13	89	68	1	0	29	0.97
129207--129316	39	2.7	40	80	14	127	69	1	0	28	1.05
129210--129317	12	9.2	12	73	19	86	69	1	0	27	1.05
129475--129499	2	12.5	2	100	0	50	52	0	0	48	1.00
130515--130586	3	24.0	3	83	10	94	61	0	0	38	0.96
131692--131740	19	2.6	19	90	3	73	30	2	10	57	1.43
132084--133176	199	5.5	199	93	1	1817	41	14	15	28	1.86
133524--133567	15	2.9	15	89	0	70	20	47	2	29	1.62
133903--133936	2	17.0	2	100	0	68	50	0	0	50	1.00
136180--137609	199	7.2	199	93	1	2206	42	14	14	28	1.85
138021--138460	218	2.0	218	99	0	862	31	18	18	30	1.95
140645--141092	182	2.5	182	90	2	670	43	13	14	28	1.83
141519--141566	23	2.1	23	96	0	87	37	16	8	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141812--142253	219	2.0	219	100	0	884	32	12	16	38	1.87
144429--144567	60	2.3	59	81	7	154	33	23	4	38	1.74
148217--148262	19	2.4	19	100	0	92	30	32	17	19	1.95
154006--154107	44	2.4	44	91	3	163	30	22	19	27	1.98
154030--154100	23	3.2	22	67	15	56	26	22	21	29	1.99

Tables:   1

The End!