Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007005.1 Hibiscus syriacus cultivar Beakdansim tig00018082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71803

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5116--5178
31
2.0
31
96
0
117
34
7
12
44
1.72
15419--15458
16
2.5
16
87
0
53
57
27
5
10
1.52
15556--15595
20
2.0
20
85
5
53
55
0
2
42
1.13
15833--15887
18
3.1
18
75
15
60
60
0
1
38
1.08
22087--22119
15
2.1
16
88
5
50
27
3
15
54
1.55
24994--25048
23
2.4
23
93
0
92
27
27
23
21
1.99
25073--25290
103
2.1
103
97
0
409
36
24
13
25
1.92
31704--31767
23
2.8
23
85
4
94
29
26
21
21
1.99
31775--32000
103
2.2
103
95
1
400
36
25
12
25
1.91
31866--31918
21
2.6
21
76
8
56
41
20
11
26
1.86
32449--32621
64
2.6
64
84
9
208
27
19
18
34
1.95
33690--33755
2
33.0
2
100
0
132
50
0
50
0
1.00
41016--41063
16
3.0
16
87
0
69
37
20
27
14
1.92
43597--43693
50
1.9
50
97
0
185
37
11
15
36
1.83
47507--47554
11
4.1
12
77
22
57
58
0
2
39
1.10
47493--47551
22
2.8
21
79
20
70
59
0
1
38
1.08
48367--48404
20
1.9
20
100
0
76
23
28
10
36
1.88
49946--50029
29
2.9
29
87
3
116
15
32
28
23
1.95
50136--50210
33
2.3
33
83
0
87
12
38
22
26
1.89
50182--50254
33
2.2
33
87
2
101
12
31
32
23
1.91
50231--50268
14
2.7
14
95
0
67
10
26
42
21
1.85
51341--51371
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51649--51699
23
2.2
24
82
7
68
45
15
5
33
1.71
51656--51711
23
2.4
23
93
3
94
42
17
7
32
1.77
52509--52594
32
2.7
32
94
0
145
34
19
17
27
1.95
54818--54962
35
4.2
35
85
5
206
44
13
8
33
1.74
54818--54986
17
9.7
17
77
7
160
43
12
10
33
1.77
54818--54981
52
3.1
52
78
7
154
43
12
10
33
1.77
54818--54962
69
2.1
69
87
6
186
44
13
8
33
1.74
55719--55751
16
2.1
16
88
5
50
60
6
6
27
1.44
59397--59436
20
2.0
20
100
0
80
25
30
20
25
1.99
65014--65076
14
4.3
15
75
11
51
53
6
6
33
1.51
65011--65068
30
1.9
30
92
0
98
53
3
8
34
1.49
65383--65461
41
1.9
41
84
5
106
53
2
0
44
1.14
65413--65563
30
4.7
30
71
23
80
49
0
1
48
1.14
65505--65568
15
4.1
15
71
28
53
46
0
0
53
1.00
65531--65617
27
3.2
26
70
20
63
49
0
2
48
1.13
67589--67766
59
3.0
60
74
13
179
43
4
19
32
1.71
67796--67840
24
1.9
23
86
4
63
51
0
4
44
1.21
67913--67990
39
2.0
38
85
2
102
48
2
1
47
1.23

Tables:   1

The End!