genome.fa.s7007.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007007.1 Hibiscus syriacus cultivar Beakdansim tig00018084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83544

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791--1858	31	2.2	32	83	2	84	27	26	27	17	1.98
9237--9299	16	4.0	16	91	2	101	26	19	33	20	1.96
14479--14518	13	3.2	13	89	3	55	60	0	20	20	1.37
16762--16807	18	2.7	17	80	6	58	34	6	28	30	1.82
17877--17938	28	2.2	28	88	2	99	43	35	6	14	1.71
17408--18160	248	3.0	248	87	6	1081	37	26	11	24	1.89
20085--20157	24	3.0	24	83	0	101	23	9	15	52	1.72
20051--20157	48	2.2	48	80	6	110	24	12	14	49	1.76
21071--21116	19	2.4	19	96	0	83	26	4	19	50	1.66
22535--22565	2	15.5	2	100	0	62	48	0	0	51	1.00
23476--23544	29	2.4	30	82	7	97	44	20	2	31	1.66
33423--33497	29	2.6	30	87	6	109	44	18	4	33	1.69
33500--33595	12	8.2	12	71	18	78	16	21	40	20	1.91
33519--33577	17	3.5	17	70	25	52	13	23	44	18	1.86
33519--33595	34	2.3	34	95	0	136	14	23	44	18	1.86
33552--33598	22	2.1	22	88	7	69	14	21	44	19	1.86
33533--33594	17	3.6	17	74	8	72	12	24	45	17	1.84
48384--48423	21	1.9	21	85	10	55	35	10	2	52	1.48
53380--53422	15	2.9	14	83	16	52	46	13	16	23	1.83
54153--54227	29	2.6	30	87	6	118	45	17	4	33	1.67
54258--54309	12	4.5	12	72	18	56	11	21	48	19	1.80
54268--54316	22	2.2	22	89	7	73	8	20	51	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54251--54314	17	3.8	17	71	22	62	9	21	48	20	1.77
58632--58676	19	2.4	19	84	0	54	20	20	6	53	1.67
65748--65782	10	3.4	10	88	4	52	85	0	11	2	0.69
69103--69136	13	2.6	13	85	0	50	32	0	35	32	1.58
74641--74674	13	2.6	13	85	0	50	32	0	35	32	1.58

Tables:   1

The End!