genome.fa.s7008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007008.1 Hibiscus syriacus cultivar Beakdansim tig00018085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61384

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1350--1394	18	2.5	18	92	0	72	46	13	6	33	1.69
7835--7882	23	2.1	23	100	0	96	45	14	8	31	1.74
8668--8709	22	1.9	22	85	9	59	23	16	19	40	1.91
13342--13427	28	3.1	27	90	5	102	52	12	4	30	1.60
13369--13416	16	3.2	16	68	31	52	52	14	6	27	1.66
15467--15517	27	1.9	26	91	0	75	62	5	3	27	1.36
16603--16768	75	2.2	75	86	2	235	42	10	13	33	1.79
16743--16814	23	3.1	22	80	7	74	34	16	13	34	1.89
16465--16863	196	2.0	196	88	1	586	39	12	13	34	1.82
19014--19067	21	2.5	22	82	14	69	42	7	1	48	1.42
18954--19101	57	2.5	57	79	16	153	42	10	2	43	1.53
19045--19176	36	3.6	38	76	13	150	43	9	3	43	1.54
19045--19203	74	2.1	74	90	2	248	44	8	3	44	1.51
19031--19211	36	5.0	38	73	18	145	44	9	2	43	1.51
19162--19197	14	2.5	14	95	4	63	47	8	0	44	1.33
19176--19230	22	2.4	23	84	6	76	41	9	1	47	1.46
19312--19837	108	4.8	109	73	10	379	35	13	12	39	1.82
19454--19913	226	2.0	223	87	2	645	33	14	12	39	1.83
20039--20083	16	2.8	16	96	0	81	33	24	6	35	1.82
20470--20581	58	1.9	59	82	12	142	32	17	4	45	1.69
20735--20864	60	2.2	59	80	4	145	43	2	19	34	1.63
21353--21420	23	2.9	24	77	14	72	64	5	10	19	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21407--21452	11	4.2	11	91	0	65	78	0	4	17	0.91
21403--21442	17	2.3	18	86	4	55	80	0	2	17	0.83
26523--26575	23	2.3	23	100	0	106	58	3	7	30	1.43
27216--27324	24	4.5	24	71	8	78	51	16	11	20	1.75
27216--27324	48	2.3	48	80	3	130	51	16	11	20	1.75
32935--32982	20	2.4	20	92	0	78	35	18	10	35	1.85
38308--38356	20	2.5	20	96	0	89	4	30	4	61	1.33
41127--41173	22	2.1	22	84	7	60	14	17	12	55	1.70
42436--42509	6	12.5	6	90	8	116	14	70	0	14	1.18
44385--44450	33	1.9	35	85	11	93	53	3	1	42	1.25
45574--45613	2	20.0	2	100	0	80	50	0	0	50	1.00
47660--47710	15	3.4	15	83	0	66	35	7	17	39	1.79
47655--47726	30	2.4	30	90	2	110	41	8	16	33	1.78
47833--47932	50	2.0	50	81	11	116	48	2	0	50	1.12
47881--48051	90	1.9	87	81	8	202	46	0	4	49	1.23
48021--48089	23	3.0	23	78	6	68	52	1	1	44	1.19
48067--48142	28	2.7	30	85	6	97	56	0	0	43	0.99
48109--48155	24	2.0	23	83	4	58	57	2	0	40	1.11
48067--48160	29	3.2	28	80	14	102	53	1	0	45	1.07
48124--48240	31	3.8	31	79	9	109	49	0	1	47	1.17
48214--48266	12	4.7	12	73	20	51	50	0	0	49	1.00
48218--48268	21	2.3	23	86	10	70	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48426--48506	42	1.9	42	87	5	119	51	14	14	18	1.76
48427--48521	42	2.3	42	83	7	113	52	14	12	20	1.74
49648--49694	24	2.0	24	83	4	60	34	4	2	59	1.29
50145--50190	22	2.1	22	84	8	58	60	2	4	32	1.28
50555--50618	31	2.1	31	91	5	103	20	21	15	42	1.89
50870--50899	15	1.9	16	93	6	53	33	0	3	63	1.11
50845--50953	47	2.2	49	82	11	134	33	0	5	59	1.27
50857--50902	21	2.3	20	82	13	60	32	0	8	58	1.28
51076--51108	17	2.0	17	94	5	59	48	0	0	51	1.00
55757--55834	18	4.3	19	78	4	65	20	16	30	32	1.95
55757--55835	36	2.2	35	84	4	95	20	17	30	31	1.96
55765--55835	18	3.9	18	81	0	79	21	18	29	30	1.97
58089--58133	23	2.0	23	90	0	72	24	26	26	22	2.00
58101--58414	149	2.1	149	95	1	569	33	21	17	27	1.96
59244--59278	18	1.9	18	88	11	54	22	17	5	54	1.64
59859--59903	21	2.1	21	87	0	63	17	24	26	31	1.97
60892--61084	76	2.6	76	89	4	279	19	24	32	23	1.97

Tables:   1

The End!