genome.fa.s7009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007009.1 Hibiscus syriacus cultivar Beakdansim tig00018091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74794

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474--565	20	4.7	20	81	12	118	42	17	20	19	1.89
474--565	40	2.3	40	87	5	134	42	17	20	19	1.89
474--583	40	2.8	39	83	9	127	40	19	20	20	1.92
1120--1191	20	3.5	20	79	7	74	52	18	15	13	1.74
1135--1198	21	3.1	21	80	6	69	53	15	20	10	1.72
1175--1244	33	2.1	33	89	0	104	50	17	21	11	1.77
1181--1252	33	2.2	33	87	0	99	50	20	18	11	1.77
1256--1307	20	2.7	20	87	3	70	9	19	21	50	1.76
2968--3341	94	4.1	93	91	5	541	21	12	18	47	1.81
2968--3341	190	2.0	179	87	7	527	21	12	18	47	1.81
3431--3492	20	3.2	20	86	4	99	50	17	22	9	1.75
3550--3651	19	5.6	19	71	11	97	13	20	19	46	1.84
5528--5563	14	2.6	14	95	0	63	33	0	25	41	1.55
5670--5754	19	4.7	19	75	16	74	45	21	18	14	1.84
5702--5764	19	3.3	19	93	0	99	44	23	15	15	1.86
5760--5882	19	6.9	19	67	18	86	13	24	19	42	1.88
5764--5857	33	2.8	33	96	0	170	13	24	19	42	1.87
5799--5907	53	2.1	52	87	1	155	13	22	19	44	1.85
5869--5896	14	2.0	14	100	0	56	14	21	21	42	1.88
7665--7712	21	2.3	21	78	3	53	37	14	20	27	1.92
7676--7792	21	5.7	21	81	4	121	36	17	24	21	1.94
8325--8385	25	2.4	25	97	2	113	27	13	14	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9125--9165	21	2.0	21	100	0	82	26	24	9	39	1.86
9159--9209	20	2.5	20	90	0	75	43	23	13	19	1.87
9357--9410	22	2.5	22	93	0	90	22	42	16	18	1.89
9751--9821	20	3.5	20	94	0	115	11	16	18	53	1.72
11826--11906	21	3.9	21	82	6	101	25	37	14	22	1.93
11824--11929	42	2.5	42	87	0	140	23	35	16	24	1.94
11824--11927	21	5.0	20	78	8	100	24	34	16	25	1.95
11830--11942	21	5.4	21	74	4	84	23	35	18	23	1.96
13288--13435	63	2.3	64	90	3	228	29	3	17	50	1.62
13494--13569	20	3.8	20	75	0	80	36	19	19	23	1.95
13790--13825	18	2.0	18	94	0	63	16	2	25	55	1.55
16087--16120	12	2.8	12	90	0	50	14	0	29	55	1.40
16989--17035	20	2.3	20	88	0	76	23	17	23	36	1.95
17050--17097	19	2.5	19	86	3	60	22	16	29	31	1.96
19272--19341	3	23.3	3	80	16	83	30	0	1	68	0.98
19266--19341	16	5.1	16	81	12	90	30	0	1	68	0.98
19272--19341	19	3.7	19	87	11	92	30	0	1	68	0.98
19273--19335	10	6.1	10	78	17	51	31	0	1	66	1.01
20344--20564	106	2.1	109	86	7	310	18	13	19	48	1.81
22075--22105	14	2.2	14	94	0	53	48	0	3	48	1.17
22148--22196	12	3.9	12	79	10	53	48	4	10	36	1.56
22375--22413	14	2.6	15	84	12	53	41	7	2	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22373--22398	10	2.6	10	100	0	52	42	7	0	50	1.31
28747--28795	23	2.1	24	84	3	64	22	18	14	44	1.85
30844--30932	2	44.5	2	100	0	178	49	0	0	50	1.00
44145--44273	23	5.7	23	86	3	165	23	31	25	20	1.98
49690--49736	24	2.0	24	87	4	69	51	0	0	48	1.00
49829--49962	28	4.8	28	93	1	225	55	5	2	36	1.34
49829--49962	55	2.4	56	93	2	234	55	5	2	36	1.34
51062--51092	16	1.9	16	100	0	62	19	35	25	19	1.95
51357--51386	14	2.1	15	93	6	53	33	23	26	16	1.96
56143--56191	2	25.0	2	84	12	66	48	2	2	46	1.25
58778--58823	24	1.9	24	100	0	92	30	13	15	41	1.85
64687--64744	29	2.0	29	83	10	73	37	8	18	34	1.82
70330--70412	29	2.9	28	96	1	148	49	13	14	22	1.78

Tables:   1

The End!