genome.fa.s701.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000701.1 Hibiscus syriacus cultivar Beakdansim tig00001363_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66728

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9303--9365	13	5.0	13	75	7	67	34	17	19	28	1.94
9168--9331	85	2.0	85	83	2	215	29	18	21	30	1.97
11410--11441	3	10.7	3	100	0	64	68	0	0	31	0.90
11004--11654	364	1.8	356	93	4	1148	42	11	16	29	1.84
17367--17940	112	5.1	112	91	2	877	45	13	15	25	1.82
17367--17940	223	2.6	225	90	2	888	45	13	15	25	1.82
17814--18266	182	2.5	181	90	1	712	43	12	15	28	1.84
18876--18946	23	3.1	23	89	0	106	36	19	8	35	1.82
20240--20273	18	1.9	18	88	5	52	17	26	29	26	1.98
20894--20938	20	2.3	19	85	11	56	64	2	0	33	1.06
21575--21620	2	23.0	2	100	0	92	50	0	0	50	1.00
22103--22175	24	3.0	24	90	4	76	9	15	26	49	1.74
22113--22168	14	4.3	14	82	17	84	7	14	26	51	1.67
22114--22175	24	2.6	24	97	0	115	8	12	25	53	1.66
23206--23256	16	3.3	16	89	5	79	11	9	17	60	1.57
24103--24181	23	3.4	23	98	0	149	39	17	18	24	1.92
27603--27641	16	2.6	16	84	8	55	23	5	2	69	1.21
30726--30764	8	5.0	8	84	6	53	10	17	12	58	1.61
31948--31986	9	4.3	9	86	0	60	84	5	10	0	0.76
31934--31992	18	3.4	17	77	9	57	77	5	15	1	1.01
31946--31992	18	2.8	16	78	12	58	80	6	12	0	0.88
32586--32627	21	2.0	21	90	9	68	40	23	11	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33587--33710	36	3.4	36	82	6	160	25	20	13	40	1.89
33686--33842	68	2.4	68	84	5	205	31	22	8	36	1.85
34450--35173	105	7.0	105	93	1	1158	33	26	17	22	1.96
34450--35173	207	3.5	207	91	2	1139	33	26	17	22	1.96
36323--36362	18	2.3	18	83	8	57	25	5	2	67	1.23
46715--46782	13	5.2	13	87	0	91	32	20	13	33	1.91
51256--51289	13	2.6	13	95	0	59	55	11	0	32	1.36
51366--51411	23	2.0	23	91	0	74	23	15	28	32	1.95
59881--59930	21	2.3	22	80	19	61	66	0	6	28	1.15
59890--59929	21	1.9	21	90	10	64	65	0	5	30	1.14

Tables:   1

The End!