Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007010.1 Hibiscus syriacus cultivar Beakdansim tig00018093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 523506
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:348101 original size:20 final size:20
Alignment explanation
Indices: 348076--348268 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
348066 CTTTAAATAT
348076 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
348096 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
348118 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
348137 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
348157 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
348177 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
348197 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
348217 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
348237 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
348257 CGCGTTGCGATT
1 CGCGTTGCGATT
348269 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:348263 original size:60 final size:60
Alignment explanation
Indices: 348076--348268 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
348066 CTTTAAATAT
**
348076 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
348137 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
348197 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
348257 CGCGTTGCGATT
1 CGCGTTGCGATT
348269 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:348349 original size:20 final size:20
Alignment explanation
Indices: 348324--348375 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
348314 AAGAATCGCG
*
348324 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
348344 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
348364 TTGCGATTCTGG
1 TTGCGATTCTGG
348376 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:358391 original size:24 final size:24
Alignment explanation
Indices: 358364--358425 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
358354 ATCACAATTC
358364 AGAGATAACCAGAAATCAGTAATA
1 AGAGATAACCAGAAATCAGTAATA
358388 AGAGATAACCAGAAATCAGTAATA
1 AGAGATAACCAGAAATCAGTAATA
* *
358412 AAAGCTAACCAGAA
1 AGAGATAACCAGAA
358426 GAGCATGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.55, C:0.15, G:0.16, T:0.15
Consensus pattern (24 bp):
AGAGATAACCAGAAATCAGTAATA
Found at i:358797 original size:24 final size:24
Alignment explanation
Indices: 358766--358814 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
358756 GAACCTGCAA
358766 CTGCTGATCTTCCATTTCCAGCAG
1 CTGCTGATCTTCCATTTCCAGCAG
358790 CTGCTGATCTTCCATTTCCAGCAG
1 CTGCTGATCTTCCATTTCCAGCAG
358814 C
1 C
358815 AGAGCGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.33
Consensus pattern (24 bp):
CTGCTGATCTTCCATTTCCAGCAG
Found at i:370196 original size:23 final size:23
Alignment explanation
Indices: 370170--370225 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
370160 AAAAACATAT
*
370170 CACAAAAACAGAAAAAAATGCGC
1 CACAAGAACAGAAAAAAATGCGC
* * *
370193 CACAAGAACATAGAAAAATGTGC
1 CACAAGAACAGAAAAAAATGCGC
370216 CACAAGAACA
1 CACAAGAACA
370226 TAAATTCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.57, C:0.21, G:0.14, T:0.07
Consensus pattern (23 bp):
CACAAGAACAGAAAAAAATGCGC
Found at i:370226 original size:23 final size:23
Alignment explanation
Indices: 370183--370227 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
370173 AAAAACAGAA
370183 AAAAATGCGCCACAAGAACATAG
1 AAAAATGCGCCACAAGAACATAG
*
370206 AAAAATGTGCCACAAGAACATA
1 AAAAATGCGCCACAAGAACATA
370228 AATTCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.53, C:0.20, G:0.16, T:0.11
Consensus pattern (23 bp):
AAAAATGCGCCACAAGAACATAG
Found at i:375701 original size:13 final size:13
Alignment explanation
Indices: 375683--375709 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
375673 CTTTGAAGTC
375683 GTTAAATAGGGAT
1 GTTAAATAGGGAT
375696 GTTAAATAGGGAT
1 GTTAAATAGGGAT
375709 G
1 G
375710 ACAATGAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (13 bp):
GTTAAATAGGGAT
Found at i:383643 original size:26 final size:26
Alignment explanation
Indices: 383597--383648 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
383587 TATAACTCAT
*
383597 AATAAATATTTCTTTAATTAATGATAA
1 AATAAATATTTCTTT-ATTAAGGATAA
383624 AATAATATATTTCTTT-TTAAGGATA
1 AATAA-ATATTTCTTTATTAAGGATA
383649 GGATTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 5 0.22
28 10 0.43
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (26 bp):
AATAAATATTTCTTTATTAAGGATAA
Found at i:396656 original size:2 final size:2
Alignment explanation
Indices: 396649--396673 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
396639 TAGTTCATGA
396649 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
396674 GTATTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:398786 original size:2 final size:2
Alignment explanation
Indices: 398779--398804 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
398769 CAATTTCTCC
398779 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
398805 GCACTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:398862 original size:3 final size:3
Alignment explanation
Indices: 398813--398844 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
398803 ATGCACTCAA
398813 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
398845 TATTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:400093 original size:59 final size:60
Alignment explanation
Indices: 399964--400093 Score: 149
Period size: 59 Copynumber: 2.2 Consensus size: 60
399954 GCTAAAAATG
* * *
399964 TTAGACCATTATTTAAGTATATTAAAAAATATTAAGTGCCTTATTCGATCGTTTCGAAATA
1 TTAGACCATTATTTAAGTATATTAAAAAATATTAACT-CCTTATTCGATCATTTCGAAAGA
* * * *
400025 TTAGGCCATTATTTTAGTGAT-TT-AAAAATATTAAACT-CTTATTTGATCATTTTGAAAGA
1 TTAGACCATTATTTAAGT-ATATTAAAAAATATT-AACTCCTTATTCGATCATTTCGAAAGA
400084 TTAGACCATT
1 TTAGACCATT
400094 GTTTCAGCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
59 27 0.46
60 9 0.15
61 21 0.36
62 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (60 bp):
TTAGACCATTATTTAAGTATATTAAAAAATATTAACTCCTTATTCGATCATTTCGAAAGA
Found at i:401546 original size:2 final size:2
Alignment explanation
Indices: 401539--401567 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
401529 AAATTTAAAT
401539 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
401568 TTTAAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:403501 original size:21 final size:21
Alignment explanation
Indices: 403463--403502 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
403453 ATGAGAAATT
* * *
403463 TCAAAAATTTTGAGAAGTTGA
1 TCAAAAATATTCAAAAGTTGA
403484 TCAAAAATATTCAAAAGTT
1 TCAAAAATATTCAAAAGTT
403503 ATGAAACGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (21 bp):
TCAAAAATATTCAAAAGTTGA
Found at i:410240 original size:32 final size:32
Alignment explanation
Indices: 410199--410260 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
410189 TCATTGAAAA
410199 ATCAATATTTTCAGATGCTATTGTATGATTCT
1 ATCAATATTTTCAGATGCTATTGTATGATTCT
*
410231 ATCAATATTTTCATATGCTATTGTATGATT
1 ATCAATATTTTCAGATGCTATTGTATGATT
410261 TTTCATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.48
Consensus pattern (32 bp):
ATCAATATTTTCAGATGCTATTGTATGATTCT
Found at i:422304 original size:17 final size:17
Alignment explanation
Indices: 422282--422314 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
422272 CCACCGCTCA
422282 GGGCCCCAAAAAAATAG
1 GGGCCCCAAAAAAATAG
*
422299 GGGCCCTAAAAAAATA
1 GGGCCCCAAAAAAATA
422315 TATCTATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.21, G:0.21, T:0.09
Consensus pattern (17 bp):
GGGCCCCAAAAAAATAG
Found at i:432984 original size:39 final size:40
Alignment explanation
Indices: 432927--433006 Score: 135
Period size: 39 Copynumber: 2.0 Consensus size: 40
432917 ATTTTAGTCA
*
432927 TCTAACTTTTTTGATGACGTAGCAGTCAACCCTTCTTCTT
1 TCTAACTTTTTTGATGACGTAGCAGTCAACCATTCTTCTT
*
432967 TCTAAC-TTTTTGCTGACGTAGCAGTCAACCATTCTTCTT
1 TCTAACTTTTTTGATGACGTAGCAGTCAACCATTCTTCTT
433006 T
1 T
433007 TTTTTTTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 32 0.84
40 6 0.16
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.42
Consensus pattern (40 bp):
TCTAACTTTTTTGATGACGTAGCAGTCAACCATTCTTCTT
Found at i:437539 original size:184 final size:184
Alignment explanation
Indices: 437227--437614 Score: 600
Period size: 184 Copynumber: 2.1 Consensus size: 184
437217 ATTAAATTTT
* * *
437227 AAATATTAAATATATTATATATAACATATGGGCTCAGTCCAAATCATTTAAAATCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAA
* * * *
437292 TTTAAGATCCAATAATTTTTAATCCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
66 TTTAAGATCCAATAACTTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
*
437357 TTATTTTATAATTATATATTAATTAAATTAATTGTAAACTGTTTTTT-AATTAAA
131 TTATTTTATAATTATATATTAATTAAATTAATTATAAACT-TTTTTTGAATTAAA
*
437411 AAATATTAAATATATTATATATAACATATGGGTTCAGCCCAAACCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAA
* *
437476 TTTATGATCCAATAACTTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATCTAAAATTT
66 TTTAAGATCCAATAACTTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
* * *
437541 TTATTTTATAATTATATATTATTTAAATTAATTATAAAGTTTTTTTGAATTTAA
131 TTATTTTATAATTATATATTAATTAAATTAATTATAAACTTTTTTTGAATTAAA
* * *
437595 AAACATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
437615 AATTAGAAAA
Statistics
Matches: 186, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
183 14 0.08
184 172 0.92
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.43
Consensus pattern (184 bp):
AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
TTATTTTATAATTATATATTAATTAAATTAATTATAAACTTTTTTTGAATTAAA
Found at i:437725 original size:26 final size:27
Alignment explanation
Indices: 437689--437740 Score: 88
Period size: 26 Copynumber: 1.9 Consensus size: 27
437679 AATATTTTTG
437689 AAAAAAAGTTCGGTTAA-CGGTTAAAT
1 AAAAAAAGTTCGGTTAATCGGTTAAAT
437715 AAAAAAAGTTCGGTTAATTCGGTTAA
1 AAAAAAAGTTCGGTTAA-TCGGTTAA
437741 TGGTAATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 17 0.71
28 7 0.29
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (27 bp):
AAAAAAAGTTCGGTTAATCGGTTAAAT
Found at i:438195 original size:31 final size:31
Alignment explanation
Indices: 438126--438198 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
438116 GTGATACCAA
* * *
438126 AATCTTATCAAATTAGTACAAAATGATCATT
1 AATCTTATCAAATTAGTAAAAAAAGACCATT
* *
438157 AATCTTATCAAATTATTAAAAAAAGACCCTT
1 AATCTTATCAAATTAGTAAAAAAAGACCATT
438188 CAA-CTTATCAA
1 -AATCTTATCAA
438199 TGTTTATCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 34 0.94
32 2 0.06
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (31 bp):
AATCTTATCAAATTAGTAAAAAAAGACCATT
Found at i:439488 original size:2 final size:2
Alignment explanation
Indices: 439481--439511 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
439471 ATGATTTTAC
439481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
439512 AAGCTATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:439541 original size:19 final size:19
Alignment explanation
Indices: 439517--439556 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
439507 ATATAAAGCT
*
439517 ATTTGAATTTAGATAAGTC
1 ATTTGAACTTAGATAAGTC
439536 ATTTGAACTTAGATAAGTC
1 ATTTGAACTTAGATAAGTC
439555 AT
1 AT
439557 GTACACCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (19 bp):
ATTTGAACTTAGATAAGTC
Found at i:446908 original size:93 final size:90
Alignment explanation
Indices: 446692--447144 Score: 535
Period size: 94 Copynumber: 5.1 Consensus size: 90
446682 AGTCCCTACG
* * * *
446692 AACAACCGTTTTCACTGTTACATTTTGTC-GAAAAACTCAGAACACATGGATCCATGC-CTGTAT
1 AACAACCATTTCCACAGTTACATTTTGTCAGAAAAACTCAGAACACATGGATCCATGCTATGTAT
** * *
446755 GTGTGTGTGTGCATATCAGCTTGTT
66 GTGTGTGCATGCATGTCAGCTTGCT
*
446780 AACAACCATTT-CACAGTTACATTTTGTCAGAAAAAACTCGGAACACATGGATCCATGTATCTAT
1 AACAACCATTTCCACAGTTACATTTTGTCAG-AAAAACTCAGAACACATGGATCCATG---CTAT
*
446844 GTATGTGTGTGCATGCATGTCATCTTGCT
62 GTATGTGTGTGCATGCATGTCAGCTTGCT
446873 AACAACCATTTCCACAGTTACATTTTGTCAGAAAAAACTCAGAACACATGGATCCATGTATCTAT
1 AACAACCATTTCCACAGTTACATTTTGTCAG-AAAAACTCAGAACACATGGATCCATG---CTAT
* *
446938 GTATGTGTGTGAATTAGCATGTCATCTTGCT
62 GTATGTGTGTGCA-T-GCATGTCAGCTTGCT
*
446969 AACAACCATTTCCACAGTTACA--TTGTCAGAAAAACTCAGAACACGTGGAT-C---C-ATGTAT
1 AACAACCATTTCCACAGTTACATTTTGTCAGAAAAACTCAGAACACATGGATCCATGCTATGTAT
447027 GTGTGT--ATGCATGTCAGCTTGCT
66 GTGTGTGCATGCATGTCAGCTTGCT
* * **
447050 AAC-ACCATTTTCACCGTTACATTTTGTCA-AAAAA-TGGGAACACATGGATCCATG-TATGTAT
1 AACAACCATTTCCACAGTTACATTTTGTCAGAAAAACTCAGAACACATGGATCCATGCTATGTAT
447111 GTGTGT-CTATGCATGTCAGCTTGCT
66 GTGTGTGC-ATGCATGTCAGCTTGCT
447136 AACAACCAT
1 AACAACCAT
447145 ATTCACCTTT
Statistics
Matches: 328, Mismatches: 18, Indels: 39
0.85 0.05 0.10
Matches are distributed among these distances:
80 28 0.09
81 23 0.07
82 7 0.02
83 1 0.00
84 12 0.04
85 12 0.04
86 21 0.06
87 21 0.06
88 11 0.03
89 25 0.08
92 2 0.01
93 56 0.17
94 71 0.22
95 1 0.00
96 37 0.11
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (90 bp):
AACAACCATTTCCACAGTTACATTTTGTCAGAAAAACTCAGAACACATGGATCCATGCTATGTAT
GTGTGTGCATGCATGTCAGCTTGCT
Found at i:447048 original size:81 final size:81
Alignment explanation
Indices: 446934--447144 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 81
446924 ATCCATGTAT
*
446934 CTATGTATGTGTGTGAATTAGCATGTCATCTTGCTAACAACCATTTCCACAGTTACA-TTGTCAG
1 CTATGTATGTGTGT--A-T-GCATGTCAGCTTGCTAACAACCATTTCCACAGTTACATTTGTCA-
*
446998 AAAAACTCAGAACACGTGGATC
61 AAAAA-TCAGAACACATGGATC
* *
447020 C-ATGTATGTGTGTATGCATGTCAGCTTGCTAAC-ACCATTTTCACCGTTACATTTTGTCAAAAA
1 CTATGTATGTGTGTATGCATGTCAGCTTGCTAACAACCATTTCCACAGTTACA-TTTGTCAAAAA
**
447083 ATGGGAACACATGGATC
65 ATCAGAACACATGGATC
447100 CATGTATGTATGTGTGTCTATGCATGTCAGCTTGCTAACAACCAT
1 C---TATGTATGTGTG--TATGCATGTCAGCTTGCTAACAACCAT
447145 ATTCACCTTT
Statistics
Matches: 110, Mismatches: 6, Indels: 17
0.83 0.05 0.13
Matches are distributed among these distances:
80 30 0.27
81 22 0.20
82 7 0.06
83 1 0.01
84 11 0.10
85 12 0.11
86 22 0.20
87 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (81 bp):
CTATGTATGTGTGTATGCATGTCAGCTTGCTAACAACCATTTCCACAGTTACATTTGTCAAAAAA
TCAGAACACATGGATC
Found at i:447235 original size:20 final size:20
Alignment explanation
Indices: 447210--447251 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
447200 TGTATGTGTT
*
447210 TACGTATGTATGCATGCATG
1 TACGTATGTATGCATGAATG
*
447230 TACGTATGTCTGCATGAATG
1 TACGTATGTATGCATGAATG
447250 TA
1 TA
447252 TGTGTGTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (20 bp):
TACGTATGTATGCATGAATG
Found at i:447283 original size:38 final size:38
Alignment explanation
Indices: 447240--447321 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 38
447230 TACGTATGTC
* *
447240 TGCATGAATGTATGTGTGTGTGTGTGTGTGTGCGTGTA
1 TGCATGAATGTATGTGTGTATGTATGTGTGTGCGTGTA
* * *
447278 TGCATGCATGTATGTTTGTATGTATGTGTGTGTGTGTA
1 TGCATGAATGTATGTGTGTATGTATGTGTGTGCGTGTA
447316 TGCATG
1 TGCATG
447322 TCAGCTTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.15, C:0.06, G:0.35, T:0.44
Consensus pattern (38 bp):
TGCATGAATGTATGTGTGTATGTATGTGTGTGCGTGTA
Found at i:454665 original size:20 final size:19
Alignment explanation
Indices: 454642--454686 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
454632 TATTTTTTAT
* *
454642 TATTTATTTATTTTTAATAA
1 TATTTATATATATTTAAT-A
*
454662 TATTTATATGTATTTAATA
1 TATTTATATATATTTAATA
454681 TATTTA
1 TATTTA
454687 ATAATAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTATATATATTTAATA
Found at i:454676 original size:26 final size:30
Alignment explanation
Indices: 454637--454692 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
454627 AATTATATTT
*
454637 TTTATTATTTATTT-AT-T-TTTAATAATA
1 TTTATTATGTATTTAATATATTTAATAATA
454664 TTTA-TATGTATTTAATATATTTAATAATA
1 TTTATTATGTATTTAATATATTTAATAATA
454693 ATAGTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 8 0.32
27 6 0.24
28 1 0.04
29 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (30 bp):
TTTATTATGTATTTAATATATTTAATAATA
Found at i:454693 original size:3 final size:3
Alignment explanation
Indices: 454685--454794 Score: 193
Period size: 3 Copynumber: 36.7 Consensus size: 3
454675 TTAATATATT
*
454685 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
454733 TAA TAA TAA TAA TGA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
454781 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
454795 TGGATAAAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 101 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:455768 original size:113 final size:113
Alignment explanation
Indices: 455113--455748 Score: 1114
Period size: 113 Copynumber: 5.6 Consensus size: 113
455103 GAATTATGCC
* * *
455113 AAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
455177 TATGAAC-TTCTCCGGAAAAGATAATCCATCAATTGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
455224 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
455289 TATGAACTTTTTCTGGCAATGTTGATCCATCAAATGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
455337 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
455402 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
455450 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
455515 TATGAACTTTCTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
*
455563 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTAAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
455628 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
455676 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
455741 TATGAACT
66 TATGAACT
455749 CGAACTGGAA
Statistics
Matches: 503, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
111 4 0.01
112 64 0.13
113 435 0.86
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGAATTCAGGT
Found at i:456824 original size:165 final size:166
Alignment explanation
Indices: 456500--456964 Score: 749
Period size: 165 Copynumber: 2.8 Consensus size: 166
456490 CCTACTGAAT
** *
456500 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTTTAAACTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
* * * *
456565 TGA-TAGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACAC
66 TGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAC
*
456628 ATTCATCTTCCAAATTCAATGATTGGTTTTGTCAAAC
130 ATTCATCTTCCAAACTCAATGATTGGTTTTGTCAAAC
*
456665 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCACATTCATCTTCCAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACACATTCATCTTCCAAATTCA
456729 ATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAC
65 ATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAC
* *
456794 ATTCATCTTCTAAACTCAATGATT-GTTTTGTCAAAT
130 ATTCATCTTCCAAACTCAATGATTGGTTTTGTCAAAC
*
456830 CAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
* * *
456895 TGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACGCTTCCAGAAGATGCTATTGGTAAA
66 TGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACA
456960 TTCAT
131 TTCAT
456965 TTGTTCTATT
Statistics
Matches: 280, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
164 2 0.01
165 199 0.71
166 77 0.28
167 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (166 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
TGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACA
TTCATCTTCCAAACTCAATGATTGGTTTTGTCAAAC
Found at i:456942 original size:248 final size:248
Alignment explanation
Indices: 456500--456964 Score: 860
Period size: 248 Copynumber: 1.9 Consensus size: 248
456490 CCTACTGAAT
*
456500 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTTTAAACTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCTAAACTCAA
456565 TGATAGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACAT
66 TGATAGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACAT
456630 TCATCTTCCAAATTCAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAG
131 TCATCTTCCAAATTCAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAG
*
456695 AAGATGCTATTGGCACATTCATCTTCCAAATTCAATGATTGGTTTTGTCAAAC
196 AAGATGCTATTGGCAAATTCATCTTCCAAATTCAATGATTGGTTTTGTCAAAC
*
456748 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCACATTCATCTTCTAAACTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACACATTCATCTTCTAAACTCA
*
456812 ATGATTGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACA
65 ATGATAGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACA
*
456877 TTCATCTTCCAAATTCAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACGCTTCCA
130 TTCATCTTCCAAATTCAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCA
*
456942 GAAGATGCTATTGGTAAATTCAT
195 GAAGATGCTATTGGCAAATTCAT
456965 TTGTTCTATT
Statistics
Matches: 210, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
248 208 0.99
249 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (248 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCTAAACTCAA
TGATAGTTTTGTCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACAT
TCATCTTCCAAATTCAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAG
AAGATGCTATTGGCAAATTCATCTTCCAAATTCAATGATTGGTTTTGTCAAAC
Found at i:456964 original size:83 final size:83
Alignment explanation
Indices: 456500--456952 Score: 743
Period size: 83 Copynumber: 5.5 Consensus size: 83
456490 CCTACTGAAT
** *
456500 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTTTAAACTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
* *
456565 TGA-TAGTTTTGTCAAAT
66 TGATTGGTTTTGTCAAAC
*
456582 CAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
456647 TGATTGGTTTTGTCAAAC
66 TGATTGGTTTTGTCAAAC
*
456665 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCACATTCATCTTCCAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACACATTCATCTTCCAAATTCA
456729 ATGATTGGTTTTGTCAAAC
65 ATGATTGGTTTTGTCAAAC
* * *
456748 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCACATTCATCTTCTAAACTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACACATTCATCTTCCAAATTCA
*
456812 ATGATT-GTTTTGTCAAAT
65 ATGATTGGTTTTGTCAAAC
*
456830 CAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
456895 TGATTGGTTTTGTCAAAC
66 TGATTGGTTTTGTCAAAC
*
456913 CAGATCAGATAACTCAAAGAACGCTTCCAGAAGATGCTAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
456953 TGGTAAATTC
Statistics
Matches: 349, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
81 2 0.01
82 138 0.40
83 207 0.59
84 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (83 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
TGATTGGTTTTGTCAAAC
Found at i:458125 original size:21 final size:22
Alignment explanation
Indices: 458105--458150 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
458095 ACCCCCTTTC
458105 TTTTTCTTCTCTTTTTTTTTCTAT
1 TTTTTC-T-TCTTTTTTTTTCTAT
458129 TTTTTCTTCTTTTTTTTT-TAT
1 TTTTTCTTCTTTTTTTTTCTAT
458150 T
1 T
458151 CTCTTCAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.18
22 11 0.50
23 1 0.05
24 6 0.27
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTCTTCTTTTTTTTTCTAT
Found at i:458126 original size:12 final size:11
Alignment explanation
Indices: 458102--458144 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
458092 TTGACCCCCT
458102 TTCTTTTTCTTC
1 TTCTTTTT-TTC
458114 -TCTTTTTTT-
1 TTCTTTTTTTC
458123 TTCTATTTTTTC
1 TTCT-TTTTTTC
458135 TTCTTTTTTT
1 TTCTTTTTTT
458145 TTTATTCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 5 0.18
11 19 0.68
12 4 0.14
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (11 bp):
TTCTTTTTTTC
Found at i:458145 original size:12 final size:12
Alignment explanation
Indices: 458100--458145 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
458090 CCTTGACCCC
458100 CTTTCTTTTTCTT
1 CTTT-TTTTTCTT
458113 CTCTTTTTTT-TT
1 CT-TTTTTTTCTT
*
458125 CTATTTTTTCTT
1 CTTTTTTTTCTT
458137 CTTTTTTTT
1 CTTTTTTTT
458146 TTATTCTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 6 0.21
12 14 0.48
13 7 0.24
14 2 0.07
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:468817 original size:18 final size:17
Alignment explanation
Indices: 468775--468818 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
468765 AAAATACTTG
*
468775 TAAATAAAACATATAAA
1 TAAATAAAAAATATAAA
*
468792 TATTATAAAAAATAATAAA
1 TA-AATAAAAAAT-ATAAA
468811 TAAATAAA
1 TAAATAAA
468819 TAAAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATAAAAAATATAAA
Found at i:470511 original size:19 final size:19
Alignment explanation
Indices: 470483--470531 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
470473 TCCGGTTCTG
470483 TCTCTCTTTTTT-CTTTTC
1 TCTCTCTTTTTTCCTTTTC
470501 TCTCATCTTTTTTCCTTTT-
1 TCTC-TCTTTTTTCCTTTTC
*
470520 TTTCT-TTTTTTC
1 TCTCTCTTTTTTC
470532 AGGTTCGGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.25
18 5 0.18
19 11 0.39
20 5 0.18
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.73
Consensus pattern (19 bp):
TCTCTCTTTTTTCCTTTTC
Found at i:471017 original size:27 final size:27
Alignment explanation
Indices: 470969--471022 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
470959 AATTATATTT
* *
470969 TTTATTATTTATTTATTTTTAATAATA
1 TTTATTATGTATTTATTATTAATAATA
470996 TTTA-TATGTATTTATATATTAATAATA
1 TTTATTATGTATTTAT-TATTAATAATA
471023 ATAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (27 bp):
TTTATTATGTATTTATTATTAATAATA
Found at i:471023 original size:3 final size:3
Alignment explanation
Indices: 471015--471133 Score: 202
Period size: 3 Copynumber: 39.7 Consensus size: 3
471005 ATTTATATAT
*
471015 TAA TAA TAA TAA TAA TAA TAA TAA TAC TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
471063 TAA TAA TGA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
471111 TAA TAA TAT TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
471134 TGGATAAAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 108 1.00
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:485585 original size:21 final size:22
Alignment explanation
Indices: 485559--485604 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
485549 CTAGAAATGT
*
485559 TAAAAAA-ATTAATATTTTAAG
1 TAAAAAATAATAATATTTTAAG
* *
485580 TAAAAAATAATAATGTTTTAGG
1 TAAAAAATAATAATATTTTAAG
485602 TAA
1 TAA
485605 TTTTTTACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (22 bp):
TAAAAAATAATAATATTTTAAG
Found at i:488825 original size:29 final size:31
Alignment explanation
Indices: 488754--488827 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
488744 TATATCATTC
*
488754 CTCATTGAACTTTATTTTCTCTCTTATTTTG
1 CTCATTGAACTTTAATTTCTCTCTTATTTTG
** *
488785 CTCACCGTACTTTCAATTT-T-TC-TATTTTG
1 CTCATTGAACTTT-AATTTCTCTCTTATTTTG
488814 CTCATTGAACTTTA
1 CTCATTGAACTTTA
488828 CATATTGAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
28 1 0.03
29 17 0.49
30 2 0.06
31 11 0.31
32 4 0.11
ACGTcount: A:0.19, C:0.22, G:0.07, T:0.53
Consensus pattern (31 bp):
CTCATTGAACTTTAATTTCTCTCTTATTTTG
Found at i:493899 original size:30 final size:30
Alignment explanation
Indices: 493860--493935 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
493850 ACCAAACCCG
*
493860 TCCCCGTCCCCATTTAGCATAAACAATTTT
1 TCCCCGTCCCCGTTTAGCATAAACAATTTT
* *
493890 TCCCTGTCCCCGTTTAGCATAAACGATTTT
1 TCCCCGTCCCCGTTTAGCATAAACAATTTT
493920 TCCCCGTCCCCGTTTA
1 TCCCCGTCCCCGTTTA
493936 ATTTAGTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.34
Consensus pattern (30 bp):
TCCCCGTCCCCGTTTAGCATAAACAATTTT
Found at i:503605 original size:31 final size:32
Alignment explanation
Indices: 503569--503634 Score: 116
Period size: 31 Copynumber: 2.1 Consensus size: 32
503559 GATAATAAGT
*
503569 TTTGATAAATTTAATGATC-ATTTTGTAACAG
1 TTTGATAAATTTAATAATCAATTTTGTAACAG
503600 TTTGATAAATTTAATAATCAATTTTGTAACAG
1 TTTGATAAATTTAATAATCAATTTTGTAACAG
503632 TTT
1 TTT
503635 CGATCTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 18 0.55
32 15 0.45
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (32 bp):
TTTGATAAATTTAATAATCAATTTTGTAACAG
Found at i:515204 original size:28 final size:28
Alignment explanation
Indices: 515172--515228 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
515162 CAATCACTTA
*
515172 ATGAGTGGATATCTAGAATGTTATATTT
1 ATGAGTGGATATCTAGAATATTATATTT
* *
515200 ATGAGTGGATGTTTAGAATATTATATTT
1 ATGAGTGGATATCTAGAATATTATATTT
515228 A
1 A
515229 AACATTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (28 bp):
ATGAGTGGATATCTAGAATATTATATTT
Found at i:516915 original size:18 final size:18
Alignment explanation
Indices: 516894--516931 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
516884 GATTTTTTTG
516894 TAATTAA-AATAATTTTAT
1 TAATTAATAAT-ATTTTAT
516912 TAATTAATAATATTTTAT
1 TAATTAATAATATTTTAT
516930 TA
1 TA
516932 TTTACTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATAATATTTTAT
Found at i:516944 original size:41 final size:42
Alignment explanation
Indices: 516899--516997 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 42
516889 TTTTGTAATT
516899 AAAATAATT-TTATT-AATTAATAATATTTTATTATTTACTAA
1 AAAATAATTATTATTAAATTAATAATA-TTTATTATTTACTAA
* * *
516940 AAAATAATATATTAGTTAAATTATTATTATTTATTATTTATTAA
1 AAAATAAT-TATTA-TTAAATTAATAATATTTATTATTTACTAA
*
516984 TAAA-AATTATTATT
1 AAAATAATTATTATT
516998 TAGATTTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
41 10 0.20
42 6 0.12
43 6 0.12
44 19 0.38
45 9 0.18
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (42 bp):
AAAATAATTATTATTAAATTAATAATATTTATTATTTACTAA
Found at i:519238 original size:18 final size:19
Alignment explanation
Indices: 519202--519244 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
519192 GGCTAATTTA
* *
519202 AAATTAAATTATATGAATG
1 AAATAAAATAATATGAATG
519221 AAATAAAATAATAT-AATG
1 AAATAAAATAATATGAATG
519239 AAATAA
1 AAATAA
519245 GCAATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
AAATAAAATAATATGAATG
Found at i:519431 original size:16 final size:16
Alignment explanation
Indices: 519412--519446 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
519402 TTTAAAAAAC
* *
519412 AAAAGGACTAAATTAT
1 AAAAGGACAAAATGAT
519428 AAAAGGACAAAATGAT
1 AAAAGGACAAAATGAT
519444 AAA
1 AAA
519447 GCATAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.14, T:0.17
Consensus pattern (16 bp):
AAAAGGACAAAATGAT
Found at i:521064 original size:43 final size:43
Alignment explanation
Indices: 521003--521186 Score: 109
Period size: 43 Copynumber: 4.4 Consensus size: 43
520993 AAAGGTGATA
*
521003 ACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGG-GTG
1 ACACGGCTCCTACGTGATGAGGA-GGCTGGTTATCTAAGGAGTG
* * *
521046 ACACGGCTCCTACGTGATGAAGAGGTCTGG---TC-GAGGAATG
1 ACACGGCTCCTACGTGATGAGGAGG-CTGGTTATCTAAGGAGTG
* * * ** * *
521086 ACACGACTCATACGTGATGA-GAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAG-GCTGGTTATCT-AAGGAG-TG
* * *
521131 ACAC-GTTCCTACGTGATGAGGACGG-T-GTTATCTATGG-TTG
1 ACACGGCTCCTACGTGATGAGGA-GGCTGGTTATCTAAGGAGTG
*
521171 ACACGGCTCATACGTG
1 ACACGGCTCCTACGTG
521187 TGATGAGAGA
Statistics
Matches: 107, Mismatches: 22, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
39 10 0.09
40 27 0.25
41 9 0.08
42 7 0.07
43 30 0.28
44 16 0.15
45 7 0.07
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
ACACGGCTCCTACGTGATGAGGAGGCTGGTTATCTAAGGAGTG
Found at i:521080 original size:127 final size:127
Alignment explanation
Indices: 520882--521284 Score: 543
Period size: 127 Copynumber: 3.2 Consensus size: 127
520872 TTACGATGTT
* * * * * * * * *
520882 GTTCCTTCGTGATGAGGAAGTCAGATTGTCTGAGGGTGACACTGCT-CTATGTGATGAAGAGGTC
1 GTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGAGGTC
520946 TGGTCGAGGAATGACACGGTATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACG
66 TGGTCGAGGAATGACACGGTATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACG
521008 GTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGAGGTC
1 GTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGAGGTC
*
521073 TGGTCGAGGAATGACACGACTCATACGTGATG-AGAGTTCTGGCCATCTAAAGGTGATAACAC-
66 TGGTCGAGGAATGACACG-GT-ATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACG
* * * *
521135 GTTCCTACGTGATGAGGACGG-T-GTTATCTATGGTTGACACGGCTCATACGTG-TGATGAGAGA
1 GTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGA--AGAGG
* * * *
521197 TCTGGTATGGGGAATGACACGG-CTACGTGA-GAAGAGTTATGGCCATCTAAAGGTGATAACACG
64 TCTGGT-CGAGGAATGACACGGTATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACG
521260 GTTCCTACGTGATGAGGACGGCTGG
1 GTTCCTACGTGATGAGGACGGCTGG
521285 CCATCTTTAG
Statistics
Matches: 248, Mismatches: 19, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
123 1 0.00
124 39 0.16
125 48 0.19
126 50 0.20
127 69 0.28
128 31 0.12
129 10 0.04
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (127 bp):
GTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGAGGTC
TGGTCGAGGAATGACACGGTATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACG
Found at i:521354 original size:26 final size:28
Alignment explanation
Indices: 521322--521388 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 28
521312 AAACCAAATT
*
521322 AAAGATTTGTTTCAA-AGAAACA-ACCC
1 AAAGATTTGTTTCAAGAAAAACATACCC
*
521348 AAAGATTTGTTTCAAGAAAAACATACTC
1 AAAGATTTGTTTCAAGAAAAACATACCC
521376 AAAGACTTTGTTT
1 AAAGA-TTTGTTT
521389 GTTTTGTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 15 0.42
27 6 0.17
28 8 0.22
29 7 0.19
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.30
Consensus pattern (28 bp):
AAAGATTTGTTTCAAGAAAAACATACCC
Found at i:521942 original size:24 final size:28
Alignment explanation
Indices: 521892--521951 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 28
521882 AGAGATAAAA
521892 ATTTGTTTCAAAAGAAATAGACTCAAAG-
1 ATTT-TTTCAAAAGAAATAGACTCAAAGT
521920 ATTTTTTC-AAAGAAA-A-ACTCAAAGT
1 ATTTTTTCAAAAGAAATAGACTCAAAGT
521945 ATTTTTT
1 ATTTTTT
521952 AATTAGAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 8 0.26
25 8 0.26
26 7 0.23
27 4 0.13
28 4 0.13
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (28 bp):
ATTTTTTCAAAAGAAATAGACTCAAAGT
Found at i:522151 original size:64 final size:64
Alignment explanation
Indices: 522083--522204 Score: 151
Period size: 65 Copynumber: 1.9 Consensus size: 64
522073 AAACGGTCTC
* *
522083 AAGAGATACAAAATTCAT-TTT-AAGAGAAACAGATC-AAGATTTTTGTTTCAAAAGAAATTATC
1 AAGAGAGACAAAATT-ATGTTTCAA-AGAAACA-ATCAAAGATTTTTATTTCAAAAGAAATTATC
522145 TT
63 TT
* *
522147 AAGAGAGACAAAATTTTGTTTCCAAAGAAACACTCAAAGATTTTTATTTCAAAAGAAA
1 AAGAGAGACAAAATTATGTTT-CAAAGAAACAATCAAAGATTTTTATTTCAAAAGAAA
522205 CACTCTCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
63 1 0.02
64 19 0.38
65 28 0.56
66 2 0.04
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (64 bp):
AAGAGAGACAAAATTATGTTTCAAAGAAACAATCAAAGATTTTTATTTCAAAAGAAATTATCTT
Found at i:522196 original size:28 final size:29
Alignment explanation
Indices: 522160--522221 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 29
522150 AGAGACAAAA
* *
522160 TTTTGTTTCCAAAGAAACA-CTCAAAGAT
1 TTTTATTTCAAAAGAAACACCTCAAAGAT
522188 TTTTATTTCAAAAGAAACACTCTCAAAGAT
1 TTTTATTTCAAAAGAAACAC-CTCAAAGAT
522218 TTTT
1 TTTT
522222 TCACAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 17 0.57
30 13 0.43
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (29 bp):
TTTTATTTCAAAAGAAACACCTCAAAGAT
Found at i:522283 original size:52 final size:52
Alignment explanation
Indices: 522209--522310 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
522199 AAGAAACACT
*
522209 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAACACTTTGTTTCAGA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAAC-TTGTTTCAGA
*
522262 CTCAAAGA-TTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTGTTTCA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTGTTTCA
522311 AAATAAAGAC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 8 0.17
52 31 0.66
53 8 0.17
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (52 bp):
CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTGTTTCAGA
Found at i:522338 original size:25 final size:24
Alignment explanation
Indices: 522306--522353 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
522296 ACAAAACTTG
*
522306 TTTCAAAATAA-AGACTCAAAGATT
1 TTTCAAAAGAACA-ACTCAAAGATT
522330 TTTCAAAAAGAACAACTCAAAGAT
1 TTTC-AAAAGAACAACTCAAAGAT
522354 ACAACTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 16 0.76
26 1 0.05
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (24 bp):
TTTCAAAAGAACAACTCAAAGATT
Found at i:522378 original size:27 final size:27
Alignment explanation
Indices: 522354--522432 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 27
522344 ACTCAAAGAT
522354 ACAACTCAAGATATTTATTCAAAAGGA
1 ACAACTCAAGATATTTATTCAAAAGGA
*
522381 ACAAACTCCAAGATTTTTATTCAAAAGGA
1 AC-AACT-CAAGATATTTATTCAAAAGGA
*
522410 ACAGACTCAA-AGATTTATCTCAA
1 ACA-ACTCAAGATATTTAT-TCAA
522433 GAGAAACTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
27 8 0.18
28 12 0.27
29 25 0.56
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.27
Consensus pattern (27 bp):
ACAACTCAAGATATTTATTCAAAAGGA
Found at i:522383 original size:40 final size:39
Alignment explanation
Indices: 522319--522394 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
522309 CAAAATAAAG
522319 ACTCAAAGATTTTTCAAAAAGAAC-AACTCAAAGATACA
1 ACTCAAAGATTTTTCAAAAAGAACAAACTCAAAGATACA
* * *
522357 ACTCAAGATATTTATTCAAAAGGAACAAACTCCAAGAT
1 ACTCAA-AGATTT-TTCAAAAAGAACAAACTCAAAGAT
522395 TTTTATTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 6 0.19
39 5 0.16
40 11 0.34
41 10 0.31
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.22
Consensus pattern (39 bp):
ACTCAAAGATTTTTCAAAAAGAACAAACTCAAAGATACA
Found at i:522401 original size:29 final size:29
Alignment explanation
Indices: 522356--522425 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
522346 TCAAAGATAC
*
522356 AACT-CAAGATATTTATTCAAAAGGAACA
1 AACTCCAAGATTTTTATTCAAAAGGAACA
522384 AACTCCAAGATTTTTATTCAAAAGGAACA
1 AACTCCAAGATTTTTATTCAAAAGGAACA
* *
522413 GACTCAAAGATTT
1 AACTCCAAGATTT
522426 ATCTCAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 4 0.11
29 34 0.89
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (29 bp):
AACTCCAAGATTTTTATTCAAAAGGAACA
Found at i:523020 original size:104 final size:103
Alignment explanation
Indices: 522798--523020 Score: 294
Period size: 104 Copynumber: 2.2 Consensus size: 103
522788 TTAGAGAAAT
*
522798 TGTCTCAAGCGAGAC-AAAGTTTGTTTTGAGAAAAACGATCTCAAGTGAGATCAACTTTGTTTAA
1 TGTCTCAAGCGAGACGAAAGTTTGTTTTGAGAAAAACAATCTCAAGTGAGATCAACTTTGTTTAA
* *
522862 TGTGAAACAAATTCGAAATTTGGATCTCAAAGGGAAAA
66 TGTGAAACAAATTCGAAAATTGGATCTCAAAGGAAAAA
* * *
522900 GGTCTCAAGCGAGACGAAA-TTTGTTTTGAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGT
1 TGTCTCAAGCGAGACGAAAGTTTGTTTTG--AGAAA-AACAATCTCAA-GTGAGATCAACTTTG-
* *
522963 TTTAA-GTGAATCAAATTC-AAAATTGTATCTCAAAGGAAAAA
61 TTTAATGTGAAACAAATTCGAAAATTGGATCTCAAAGGAAAAA
523004 TGTCTCAAGCGAGACGA
1 TGTCTCAAGCGAGACGA
523021 GTTTGTGTTT
Statistics
Matches: 106, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
102 23 0.22
103 3 0.03
104 43 0.41
105 32 0.30
106 5 0.05
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (103 bp):
TGTCTCAAGCGAGACGAAAGTTTGTTTTGAGAAAAACAATCTCAAGTGAGATCAACTTTGTTTAA
TGTGAAACAAATTCGAAAATTGGATCTCAAAGGAAAAA
Found at i:523212 original size:35 final size:34
Alignment explanation
Indices: 523180--523296 Score: 153
Period size: 35 Copynumber: 3.3 Consensus size: 34
523170 AGTGAGACGG
*
523180 AATTTGTTTTTCAGAAATTGTCTCAAACGAGACAA
1 AATTTGTTTTT-AGAAATTGTCTCAAGCGAGACAA
*
523215 AATTTGTTTTTAGAAAGCTGTCTCAAGCGAGACAA
1 AATTTGTTTTTAGAAA-TTGTCTCAAGCGAGACAA
**
523250 AATTTGCTTTGAAAGAAATTGTCTCAAGCGAGACAAA
1 AATTTG-TTT-TTAGAAATTGTCTCAAGCGAGAC-AA
523287 AATTTGTTTT
1 AATTTGTTTT
523297 AAAATTCTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
34 5 0.07
35 33 0.46
36 21 0.29
37 13 0.18
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (34 bp):
AATTTGTTTTTAGAAATTGTCTCAAGCGAGACAA
Done.