Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007011.1 Hibiscus syriacus cultivar Beakdansim tig00018098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50530

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4018--4154
59
2.3
59
81
2
177
29
18
22
29
1.97
4208--4246
20
2.0
20
84
0
51
20
5
20
53
1.64
4247--4355
46
2.4
45
85
8
150
35
4
23
35
1.76
10513--10557
16
2.8
17
86
6
58
28
28
15
26
1.96
10971--11036
19
3.5
19
82
0
69
43
7
16
31
1.76
10973--11055
19
4.4
19
81
0
58
42
6
16
34
1.73
11090--11145
12
4.5
13
79
4
62
55
0
23
21
1.44
11347--11392
2
23.0
2
100
0
92
50
0
0
50
1.00
17539--17596
19
3.1
18
80
9
62
44
1
15
37
1.57
22613--22884
49
5.6
49
83
1
332
27
20
15
36
1.93
31458--31488
15
2.1
15
93
0
53
19
35
12
32
1.90
34279--34312
16
2.1
16
94
0
59
2
44
5
47
1.42
34279--34311
15
2.1
16
88
5
50
3
45
6
45
1.43
36974--37043
22
3.5
20
83
9
88
31
15
24
28
1.96
37383--37535
55
2.8
55
80
2
164
33
11
22
32
1.89
37747--38134
68
5.7
68
89
1
591
31
15
23
29
1.95
38084--38564
81
5.9
81
84
1
545
36
11
24
28
1.89
40511--40549
21
1.9
21
94
5
71
28
20
28
23
1.99
40512--40564
21
2.5
21
84
6
63
33
18
24
22
1.97
40904--40968
22
3.0
22
93
0
103
29
15
20
35
1.93
41729--41771
19
2.4
17
82
14
59
53
0
6
39
1.28
41735--41771
19
1.9
19
100
0
74
54
0
5
40
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41768--41813
18
2.5
19
75
13
51
47
2
4
45
1.34
41735--41850
46
2.6
44
75
16
107
51
0
5
42
1.30
41739--41850
41
2.6
42
76
12
111
53
0
4
41
1.27
41919--41964
13
3.1
16
73
20
55
19
10
0
69
1.17
46045--46086
21
1.9
22
90
9
68
30
0
38
30
1.58
47886--48176
59
4.9
58
85
4
377
27
15
25
31
1.96

Tables:   1

The End!