genome.fa.s7012.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007012.1 Hibiscus syriacus cultivar Beakdansim tig00018103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70335

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308--382	30	2.5	31	89	8	111	38	4	21	36	1.72
593--731	39	3.5	40	91	6	228	48	20	8	23	1.77
606--734	42	3.1	42	94	5	237	48	20	9	22	1.78
3159--3212	24	2.3	23	90	3	81	50	9	7	33	1.62
7850--7935	30	2.9	30	74	8	86	36	10	5	47	1.62
7849--7935	29	2.9	29	76	5	93	35	10	5	48	1.61
9346--9472	59	2.1	59	84	7	159	33	23	3	38	1.73
13575--13624	24	2.1	24	84	0	64	38	12	30	20	1.88
15479--15554	37	2.1	37	94	0	134	34	15	23	26	1.95
19573--19617	20	2.2	20	88	0	63	42	20	22	15	1.89
19498--19597	49	2.0	49	86	0	137	37	12	21	30	1.89
19547--19700	76	2.0	76	94	0	272	38	16	20	24	1.92
19649--19773	20	6.3	19	77	3	70	41	19	19	20	1.91
19678--19774	40	2.4	41	89	5	162	41	18	17	22	1.90
20077--20125	20	2.5	20	83	6	64	20	16	22	40	1.91
20115--20191	20	3.8	21	77	5	77	19	15	31	33	1.93
21682--21769	42	2.1	42	85	6	115	36	35	14	13	1.86
23381--23419	18	2.2	18	85	0	51	35	2	0	61	1.10
24000--24036	18	2.1	18	95	5	67	43	16	0	40	1.48
26964--27034	30	2.4	30	85	0	97	30	15	15	38	1.89
27099--27133	9	3.9	9	92	0	61	45	20	8	25	1.79
27248--27286	17	2.4	17	95	4	71	43	0	5	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28372--28429	29	2.0	29	100	0	116	44	10	6	37	1.65
28483--28532	11	4.7	11	74	18	52	12	2	8	78	1.05
28487--28541	19	2.8	19	84	10	67	10	1	9	78	1.05
28609--28654	20	2.2	21	88	3	67	10	4	8	76	1.15
30707--30805	29	3.4	29	78	8	121	30	31	21	17	1.96
30708--30816	57	1.9	57	92	0	182	32	31	20	16	1.95
30791--30885	31	3.1	31	76	3	102	34	20	17	27	1.95
31531--31696	64	2.6	65	80	6	196	27	18	19	33	1.96
33610--33720	23	5.2	22	64	24	67	48	18	9	23	1.76
33584--33731	42	3.5	41	95	3	260	50	20	6	22	1.72
33591--33697	19	5.2	19	64	24	56	52	19	5	22	1.67
36480--36533	24	2.3	23	90	3	81	50	9	7	33	1.62
39382--39418	18	2.0	18	89	5	56	27	18	18	35	1.95
53249--53364	24	4.8	24	83	6	137	25	15	18	41	1.89
53265--53303	12	3.2	12	79	13	53	28	12	23	35	1.91
56544--56587	20	2.1	21	83	4	54	31	25	0	43	1.55
59634--59763	60	2.2	60	83	2	154	30	16	21	31	1.95
60793--60868	39	1.9	39	97	0	143	35	21	5	38	1.76
63354--63391	20	1.9	19	89	5	58	44	7	26	21	1.79

Tables:   1

The End!