genome.fa.s7013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007013.1 Hibiscus syriacus cultivar Beakdansim tig00018104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69691

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2528--2584	25	2.3	25	96	0	105	35	14	21	29	1.92
4656--4690	2	17.5	2	100	0	70	51	0	0	48	1.00
5466--5540	31	2.4	31	86	4	96	44	9	2	44	1.50
8104--8207	39	2.7	40	79	14	110	54	4	3	36	1.40
10432--10486	25	2.2	25	93	0	92	18	49	7	25	1.73
10861--10908	17	2.8	17	90	3	69	16	29	27	27	1.97
13748--13809	30	2.1	30	100	0	124	11	32	24	32	1.90
13713--13941	74	2.9	77	81	12	266	15	27	23	33	1.95
13778--14082	44	7.0	44	84	6	381	18	26	22	32	1.97
17436--17484	22	2.3	21	89	6	73	32	8	12	46	1.71
19720--19797	20	3.8	21	77	5	79	34	29	15	20	1.93
19757--19796	21	1.9	21	100	0	80	30	30	15	25	1.95
19781--19879	40	2.5	40	81	3	119	43	19	18	19	1.88
19786--19880	20	4.8	20	76	5	93	42	18	18	20	1.90
20000--20050	22	2.3	22	86	0	75	19	43	21	15	1.88
20432--20480	20	2.6	18	84	12	62	18	16	18	46	1.84
22587--22681	21	4.6	21	77	7	95	23	33	21	22	1.97
22589--22681	41	2.2	42	84	5	118	22	34	21	21	1.97
24021--24126	27	3.7	27	71	17	97	28	0	19	50	1.54
24011--24175	64	2.7	63	92	3	264	24	3	17	54	1.57
27078--27139	31	2.0	32	87	3	90	19	20	41	17	1.90
27077--27132	18	3.4	18	67	23	50	19	21	42	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34562--34608	13	3.8	13	78	16	55	17	19	46	17	1.84
36770--36823	24	2.2	24	93	0	90	40	20	18	20	1.91
36770--36837	24	2.8	24	84	0	64	38	20	17	23	1.93
36949--36981	12	2.8	12	95	0	57	15	0	24	60	1.35
37748--37838	20	4.6	20	71	14	71	32	12	21	32	1.90
37750--37838	40	2.2	40	83	0	115	33	12	21	32	1.90
37864--37999	20	6.8	20	85	8	163	18	19	19	41	1.90
40690--40748	29	2.0	29	96	0	109	25	13	13	47	1.79
41030--41519	246	2.0	246	98	0	953	26	16	20	36	1.94
45620--45707	29	3.0	29	96	0	167	22	13	13	50	1.77
49884--49929	24	1.9	24	100	0	92	41	15	13	30	1.85
57124--57169	24	1.9	24	100	0	92	41	15	13	30	1.85
60244--60270	2	13.5	2	100	0	54	48	0	0	51	1.00
63352--63381	6	5.0	6	100	0	60	16	50	16	16	1.79
64103--67475	191	17.8	194	93	4	5853	42	13	11	32	1.80
69003--69134	26	5.2	24	81	15	78	39	2	4	53	1.34
69017--69137	26	4.6	27	85	10	169	37	2	4	55	1.35
69214--69270	25	2.2	27	75	15	66	50	0	0	49	1.00
69229--69270	13	3.3	13	81	15	52	54	0	0	45	0.99

Tables:   1

The End!