Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007014.1 Hibiscus syriacus cultivar Beakdansim tig00018107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76250

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9689--9732
20
2.2
20
91
0
70
31
13
20
34
1.92
15092--15130
2
18.5
2
89
10
60
48
0
5
46
1.24
22766--22833
30
2.3
31
80
10
79
44
4
4
47
1.43
23504--23541
20
1.9
20
89
10
60
31
0
2
65
1.06
23692--23721
12
2.5
12
94
0
51
60
0
3
36
1.14
27699--27821
7
17.7
7
72
14
76
41
35
1
21
1.63
29711--29770
6
10.2
6
92
3
86
30
48
16
5
1.67
29711--29765
23
2.3
23
84
3
74
29
49
16
5
1.68
29768--29821
5
10.8
5
93
0
72
16
37
40
5
1.72
35654--35840
6
31.2
6
97
0
257
26
49
16
6
1.71
35838--35881
5
8.8
5
92
0
61
18
36
40
4
1.71
37190--37434
86
2.9
87
86
7
326
43
12
11
31
1.79
37320--37364
22
2.1
21
84
8
56
46
4
8
40
1.55
38339--38433
3
29.7
3
72
14
66
4
27
1
67
1.16
38339--38433
10
8.8
10
73
16
66
4
27
1
67
1.16
38363--38402
16
2.4
16
95
4
71
2
17
0
80
0.83
39980--40008
14
2.1
14
93
6
51
86
0
0
13
0.58
41819--41858
17
2.4
17
87
4
55
42
0
0
57
0.98
42214--42248
18
1.9
18
94
0
61
37
0
0
62
0.95
43167--43236
34
2.1
32
89
5
104
21
31
15
31
1.95
43510--43550
21
2.0
21
90
4
66
26
26
21
24
2.00
43657--43719
19
3.3
19
90
0
81
36
12
11
39
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43784--43874
31
3.0
31
95
3
159
42
16
6
34
1.74
44460--44516
18
3.4
18
67
28
54
49
14
5
31
1.65
44564--44619
28
2.1
25
87
9
76
25
23
0
51
1.48
55105--55143
18
2.2
18
95
0
69
23
15
15
46
1.83
60369--60397
3
9.7
3
100
0
58
34
34
0
31
1.58
64326--64361
17
2.2
17
90
5
56
72
0
0
27
0.85
64322--64360
17
2.3
18
82
13
55
66
0
0
33
0.92
68388--68427
18
2.2
19
86
4
55
40
2
0
57
1.12

Tables:   1

The End!