Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007015.1 Hibiscus syriacus cultivar Beakdansim tig00018116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70201

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1789--1837
19
2.5
19
83
3
62
30
30
16
22
1.96
1904--1978
20
3.8
20
68
18
57
26
21
16
36
1.94
5057--5097
12
3.4
12
86
0
55
56
24
2
17
1.53
5056--5090
6
5.8
6
86
0
52
60
20
2
17
1.49
5333--5411
20
4.0
20
81
0
95
21
20
21
36
1.95
5470--5618
64
2.3
64
91
0
235
52
16
2
28
1.57
6970--7082
21
5.4
21
76
4
102
23
18
36
22
1.95
6970--7088
42
2.8
42
87
0
148
23
17
36
22
1.95
7404--7478
21
3.6
21
68
12
55
30
37
12
20
1.89
9113--9196
20
4.2
20
95
0
150
50
22
17
9
1.75
9535--9589
22
2.5
22
81
0
65
21
16
40
21
1.91
9761--9804
21
2.1
21
95
0
79
38
11
25
25
1.89
10938--10977
2
20.0
2
89
0
62
47
2
2
47
1.29
13174--13223
23
2.1
24
85
3
66
10
10
0
80
0.92
13801--13914
42
2.7
40
80
9
129
30
21
19
28
1.98
13966--14092
58
2.2
57
83
5
157
44
16
11
27
1.83
14133--14329
55
3.6
55
82
7
231
39
18
9
32
1.82
16059--16097
2
19.5
2
100
0
78
0
0
48
51
1.00
20400--20465
6
10.3
6
75
12
60
48
12
18
21
1.80
20400--20450
14
3.8
14
79
10
70
49
9
19
21
1.77
20402--20462
26
2.3
26
100
0
122
45
11
19
22
1.82
23969--24134
59
2.8
61
78
10
191
34
19
4
41
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26379--26404
11
2.4
11
100
0
52
61
7
0
30
1.24
30406--30500
32
3.0
33
72
7
88
22
13
27
36
1.92
30406--30513
32
3.4
31
75
7
83
23
13
26
36
1.92
30896--30927
15
2.1
16
94
5
57
56
0
0
43
0.99
32440--32484
15
3.0
15
80
0
54
11
13
62
13
1.55
33598--33636
15
2.5
15
87
8
51
48
5
0
46
1.24
33567--33697
63
2.1
63
97
0
244
45
6
3
45
1.43
44073--44185
60
1.9
60
87
3
165
32
19
13
34
1.90
50866--50898
2
16.5
2
100
0
66
48
0
0
51
1.00
53377--53422
24
2.0
24
86
4
67
32
21
19
26
1.97
54771--54828
30
1.9
30
92
0
98
24
25
37
12
1.90

Tables:   1

The End!