Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007016.1 Hibiscus syriacus cultivar Beakdansim tig00018121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70071

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2004--2063
29
2.1
29
93
0
102
16
18
20
45
1.86
2034--2237
71
2.9
70
81
8
224
26
21
14
38
1.91
2039--2163
36
3.5
36
90
2
189
24
21
15
39
1.91
2346--2418
30
2.5
30
81
2
85
31
19
13
35
1.91
2217--2506
120
2.4
123
83
9
339
30
19
14
35
1.92
2430--2493
28
2.2
28
88
5
92
37
20
14
28
1.91
2923--3537
91
6.9
91
85
7
770
37
17
20
24
1.94
5690--5755
18
3.7
18
100
0
132
48
0
4
46
1.22
12428--12521
31
3.1
30
81
4
116
46
10
2
40
1.50
14336--14481
21
6.9
21
88
2
204
15
17
19
46
1.84
18261--18293
16
2.0
16
94
5
57
54
0
0
45
0.99
21699--21739
21
2.0
21
85
4
57
17
39
0
43
1.49
24815--24855
21
2.0
21
85
4
57
17
39
0
43
1.49
27492--27529
20
1.9
20
88
0
58
60
2
0
36
1.11
27532--27573
22
1.9
22
85
9
59
47
0
7
45
1.30
32914--32991
40
2.0
40
82
10
97
46
10
7
35
1.67
35262--35317
28
2.0
27
83
10
69
33
10
17
37
1.85
37626--37781
65
2.4
64
89
3
215
30
19
23
27
1.98
39930--39967
13
2.8
13
85
14
51
47
5
10
36
1.61
40454--40525
23
3.2
22
75
15
76
31
22
20
25
1.98
40455--40551
44
2.2
44
85
10
128
30
20
21
26
1.98
40454--40516
21
2.9
21
79
13
74
31
22
20
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46319--46471
65
2.4
64
84
3
173
32
18
20
28
1.96
48535--48577
20
2.3
19
88
11
70
23
30
9
37
1.86
48540--48577
20
1.9
20
100
0
76
23
28
10
36
1.88
48942--48978
14
2.6
14
95
0
65
56
8
5
29
1.51
57709--57737
2
14.5
2
100
0
58
51
0
0
48
1.00
58207--58274
23
3.0
23
86
0
100
17
26
26
29
1.98
60434--60471
20
1.9
20
100
0
76
36
10
28
23
1.88
60660--60711
23
2.3
23
100
0
104
42
3
0
53
1.19

Tables:   1

The End!