Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007017.1 Hibiscus syriacus cultivar Beakdansim tig00018127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94528

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33--86
21
2.5
22
81
6
65
20
0
1
77
0.86
189--239
21
2.6
21
79
14
56
35
11
0
52
1.38
248--278
12
2.6
12
94
0
53
12
6
3
77
1.08
5634--6097
36
13.2
36
73
10
318
27
19
11
41
1.86
5724--6069
137
2.5
138
88
0
505
28
20
10
40
1.86
5944--6100
73
2.2
72
86
2
208
26
21
10
40
1.86
6020--6084
21
3.4
20
72
24
68
29
21
9
40
1.84
6154--6250
32
3.0
33
79
11
103
41
17
12
28
1.86
6170--6250
32
2.5
34
84
10
114
38
17
12
32
1.87
7921--7948
2
14.0
2
100
0
56
50
0
0
50
1.00
8255--8281
13
2.1
13
100
0
54
14
7
0
77
0.97
11012--11052
21
2.0
21
85
0
55
26
9
48
14
1.75
11847--11875
15
1.9
15
100
0
58
20
20
10
48
1.79
11847--11881
15
2.3
15
90
0
52
17
22
8
51
1.72
23975--24050
23
3.2
23
80
9
73
39
0
6
53
1.27
25434--25473
20
2.0
20
90
9
64
70
0
30
0
0.88
28773--28810
18
2.1
18
95
0
67
18
36
23
21
1.95
29318--29387
36
2.0
36
91
2
115
27
18
15
38
1.91
35715--35939
36
6.3
36
90
2
346
18
25
23
32
1.97
35714--35939
107
2.1
107
91
2
364
18
25
23
32
1.97
36779--37131
176
2.0
176
97
0
670
37
24
11
27
1.89
37805--37849
12
3.8
12
77
16
58
64
0
33
2
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37804--37846
23
2.0
22
90
9
70
65
0
32
2
1.06
40736--40783
21
2.3
21
81
0
60
27
8
52
12
1.67
45407--45478
36
2.0
35
91
2
117
26
18
16
38
1.91
46303--46339
19
1.9
19
88
0
56
37
2
5
54
1.38
46525--46595
30
2.3
31
82
2
90
39
4
8
47
1.53
48620--48651
16
2.0
16
93
0
55
40
0
18
40
1.51
57979--58025
21
2.2
21
88
0
67
25
8
53
12
1.67
62641--62682
21
2.0
20
86
4
57
38
14
7
40
1.73
67299--67340
21
2.0
20
86
4
57
38
14
7
40
1.73
67342--67379
20
1.9
20
94
0
67
39
15
10
34
1.82
71721--71812
27
3.4
27
73
11
73
28
1
3
67
1.13
71973--71999
13
2.1
13
100
0
54
14
7
0
77
0.97
77432--77897
36
13.2
36
74
10
356
26
19
11
42
1.85
77615--77900
37
8.1
36
76
10
203
27
20
11
40
1.87
77521--77868
138
2.5
138
90
0
543
28
20
10
41
1.85
77615--77900
73
4.0
72
75
11
248
27
20
11
40
1.87
77819--77884
21
3.4
21
70
25
72
28
21
9
40
1.83
77954--78050
32
3.0
32
79
14
110
40
17
12
29
1.86
77970--78050
32
2.5
34
86
10
123
37
17
12
33
1.87
79811--79892
23
3.4
23
75
14
69
28
0
3
68
1.06
80056--80082
13
2.1
13
100
0
54
14
7
0
77
0.97
85770--85867
31
3.2
31
78
5
103
45
4
6
43
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91922--91960
19
2.1
19
85
0
51
2
17
2
76
1.01
92378--92428
13
3.9
14
78
19
56
66
1
0
31
1.03
92393--92445
21
2.6
20
85
11
72
71
3
1
22
1.12
92671--93381
109
6.4
112
85
6
936
28
20
14
36
1.92
92670--93383
220
3.2
222
88
5
1056
28
20
14
36
1.92
93399--93655
76
3.4
76
90
2
403
32
22
19
25
1.97

Tables:   1

The End!