genome.fa.s702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000702.1 Hibiscus syriacus cultivar Beakdansim tig00001365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135243

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8275--8311	18	2.0	19	85	15	51	59	2	0	37	1.12
12166--12214	20	2.4	21	87	12	68	59	12	2	26	1.44
12792--12820	11	2.7	11	94	5	51	68	0	17	13	1.20
13650--13772	65	1.9	65	93	0	210	25	14	8	52	1.69
15603--15664	26	2.4	26	97	0	115	14	14	11	59	1.61
19663--19736	22	3.5	22	85	7	102	14	25	31	28	1.95
19703--19737	18	1.9	18	94	0	61	17	20	34	28	1.95
28532--28579	5	9.6	5	86	0	69	20	37	37	4	1.72
30534--30597	12	5.3	12	70	20	53	18	15	12	53	1.73
30537--30618	24	3.4	24	82	0	101	20	14	10	53	1.71
30578--30623	24	1.9	24	81	0	56	26	10	8	54	1.64
30698--31042	44	8.1	44	82	5	299	21	26	22	29	1.99
30937--31042	39	2.7	39	90	7	155	21	26	23	28	1.99
38533--38572	21	1.9	21	85	10	55	35	10	2	52	1.48
45161--45270	37	3.0	37	85	2	132	22	20	17	39	1.93
58983--59023	2	21.0	2	85	5	57	53	0	0	46	1.00
60629--60696	30	2.3	31	89	7	113	35	11	14	38	1.83
67437--67506	34	2.1	34	97	0	131	27	15	8	48	1.74
69472--69538	34	2.0	33	82	2	80	32	17	19	29	1.95
71634--71673	21	1.9	21	89	0	62	55	7	2	35	1.42
72659--72688	13	2.4	13	94	5	53	60	0	16	23	1.36
73643--73682	20	2.0	21	95	5	73	22	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74307--74709	201	2.0	201	99	0	797	44	9	10	35	1.72
77096--77135	20	2.0	21	90	5	64	20	20	22	37	1.94
77421--77452	11	2.9	11	95	0	55	53	9	12	25	1.68
88892--88921	15	1.9	16	93	6	53	36	6	30	26	1.82
90273--90335	3	21.0	3	79	12	67	61	0	1	36	1.05
90272--90329	21	2.8	22	82	10	77	60	0	3	36	1.14
90276--90335	18	3.3	18	90	0	84	61	0	1	36	1.06
90541--90880	131	2.6	130	79	6	371	25	19	29	25	1.98
90883--91038	66	2.4	64	79	11	167	44	12	16	26	1.83
91183--91302	36	3.3	37	84	3	163	39	10	16	33	1.84
96752--97239	243	2.0	240	93	2	843	28	13	17	40	1.87
97546--97579	16	2.1	16	100	0	68	38	0	5	55	1.24
101126--101184	28	2.1	28	83	0	73	55	11	10	22	1.65
101226--101255	14	2.1	14	100	0	60	10	30	6	53	1.60
102662--103179	260	2.0	255	98	1	991	28	14	13	43	1.84
105028--105108	33	2.4	35	89	4	121	34	11	16	38	1.84
105028--105122	33	2.8	33	81	13	113	34	10	15	38	1.82
105126--105235	36	3.1	36	80	5	134	39	15	21	23	1.92
105135--105224	34	2.6	35	87	3	119	43	17	20	18	1.88
105293--105477	36	5.3	36	68	14	127	37	14	20	28	1.91
105391--105477	37	2.4	36	84	1	111	39	14	20	25	1.91
105262--105644	102	3.8	101	84	2	428	38	12	18	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105420--105741	167	1.9	166	91	0	527	40	12	18	29	1.87
105568--105689	65	1.9	65	83	6	158	39	12	18	30	1.87
105722--105770	21	2.3	21	92	0	80	44	10	20	24	1.82
105737--105989	72	3.5	72	81	4	285	40	13	17	28	1.88
107138--107491	183	1.9	183	95	0	645	30	21	20	27	1.98
111324--111397	26	2.7	25	81	12	67	68	6	12	12	1.37
111644--111728	38	2.2	36	82	15	93	64	3	2	29	1.22
112125--112169	23	2.0	23	86	0	63	13	8	28	48	1.72
119970--120004	13	2.7	13	86	0	52	11	25	0	62	1.28
126197--126229	17	2.1	17	88	11	52	57	12	21	9	1.62
128198--128304	45	2.4	42	77	13	115	31	15	23	28	1.96
128288--128338	19	2.7	19	85	8	70	25	15	35	23	1.94
128352--128391	21	1.9	21	94	0	71	22	15	30	32	1.94
130935--131014	24	3.5	23	77	14	94	28	23	25	22	1.99
130912--131034	44	2.8	42	78	6	129	25	21	27	26	1.99
133030--133061	12	2.7	12	100	0	64	28	25	15	31	1.96

Tables:   1

The End!