Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007020.1 Hibiscus syriacus cultivar Beakdansim tig00018134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95164
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Found at i:3722 original size:25 final size:26
Alignment explanation
Indices: 3679--3731 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
3669 ACTAAGAGCA
*
3679 TATGGTGGGCACAATCTTATGTGTAT
1 TATGGTGGGCACAACCTTATGTGTAT
*
3705 TATGGT-GGCACGACCTTATGTGTAT
1 TATGGTGGGCACAACCTTATGTGTAT
3730 TA
1 TA
3732 ACACTTCGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (26 bp):
TATGGTGGGCACAACCTTATGTGTAT
Found at i:36630 original size:17 final size:15
Alignment explanation
Indices: 36595--36635 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 15
36585 AATAAAAAGG
36595 AATAA-GAAAAAAAT
1 AATAATGAAAAAAAT
36609 AATAATGAAATAAAAT
1 AATAATGAAA-AAAAT
36625 AGATAATGAAA
1 A-ATAATGAAA
36636 GCAGAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.21
15 4 0.17
16 6 0.25
17 9 0.38
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.20
Consensus pattern (15 bp):
AATAATGAAAAAAAT
Found at i:44233 original size:46 final size:46
Alignment explanation
Indices: 44136--44852 Score: 661
Period size: 46 Copynumber: 15.4 Consensus size: 46
44126 AGAGTTATCA
* * * *** * *
44136 GTTATGCATTTTCGTTTATGACATCCTTTTATATTGATATTACACC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* ** * **
44182 ATTATGCATTTTCAATTGTGGCATCCTATCATGCCGATAATGCATT
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * *
44228 GTTATGCATTTTTGTTTATGGCATCATTTCATGCCGATAATGCACC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * * * * *
44274 GATATACATTTTTGTTTGTGGCATCCTTTCATGTCGTTAATGCACT
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * *
44320 GTTATGCATTTTTGTTTGTGGCACCCTTTCATGCCGATAATGCATC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * *
44366 ATTATGCATTTTTGTTTGTGGTATCCTTTCATGCTAATAACGCACCGATAATGCACC
1 GTTATGCATTTTCGTTTGTGGCATCC-TT--T-C--AT---G--CCGATAATGCACC
* *
44423 GTTATGCAATTTT-GTTTGTAGCATCCTTTCATGTCGATAATGCACC
1 GTTATGC-ATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * * *
44469 GTAATGCATTTTCATTTGTGGCATCCTTTCATGTCGATAATGTACC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * * **
44515 GTTATGCATTTTCGTTTTTGGTATCCTTTCATACCGATAATGCATA
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
**
44561 GTTATGCATTATT-GTTTGTGGCATCCTTTCATGTTGATAATGCACC
1 GTTATGCATT-TTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
** ** * * ** * * * *
44607 GTTATAAATTTTATTTTATGACATTGTTTCAAGTCGATAATTCATC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * * *
44653 GTTATGTATTTTCATTTGTGGCATCCTTTCATGTCGATAATGCA-T
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
*
44698 GTTATGCATTTTCGTTTGTGGCATCATTTCATGCCGATAATGCACC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * **
44744 ATTATGCATTTTCATTTGT-GCATCCTTTCATGCC-ATAATGCATT
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
* * * *
44788 GTTATACATTTTCATTTGTGGCATCCTTTCATGCCAATAATGCATC
1 GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
**
44834 GTTACACATTTTCGTTTGT
1 GTTATGCATTTTCGTTTGT
44853 TCATTCATTT
Statistics
Matches: 551, Mismatches: 102, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
44 25 0.05
45 76 0.14
46 400 0.73
47 4 0.01
48 1 0.00
49 1 0.00
50 1 0.00
51 2 0.00
52 2 0.00
53 1 0.00
54 1 0.00
55 1 0.00
56 2 0.00
57 29 0.05
58 5 0.01
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (46 bp):
GTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGATAATGCACC
Found at i:44396 original size:138 final size:138
Alignment explanation
Indices: 44136--44852 Score: 731
Period size: 138 Copynumber: 5.1 Consensus size: 138
44126 AGAGTTATCA
* * * * * * * * * *
44136 GTTATGCATTTTCGTTTATGACATCCTTTTATATTGATATTACACCATTATGCATTTTCAATTGT
1 GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCATTTGT
* * * * *
44201 GGCATCCTATCATGCCGATAATGCATTGTTATGCATTTTTGTTTATGGCATCATTTCATGCCGAT
66 GGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGAT
44266 AATGCACC
131 AATGCACC
* * * * **
44274 GATATACATTTTTGTTTGTGGCATCCTTTCATGTCGTTAATGCACTGTTATGCATTTTTGTTTGT
1 GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCATTTGT
* * * *
44339 GGCACCCTTTCATGCCGATAATGCATCATTATGCATTTTTGTTTGTGGTATCCTTTCATGCTAAT
66 GGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCC-TT--T-C--AT
44404 AACGCACCGATAATGCACC
125 ---G--CCGATAATGCACC
* * *
44423 GTTATGCAATTTTGTTTGTAGCATCCTTTCATGTCGATAATGCACCGTAATGCATTTTCATTTGT
1 GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCATTTGT
* * * * * *
44488 GGCATCCTTTCATGTCGATAATGTACCGTTATGCATTTTCGTTTTTGGTATCCTTTCATACCGAT
66 GGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGAT
**
44553 AATGCATA
131 AATGCACC
* * ** *
44561 GTTATGCATTATTGTTTGTGGCATCCTTTCATGTTGATAATGCACCGTTATAAATTTT-ATTTTA
1 GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCA-TTTG
* ** * * * * * *
44625 TGACATTGTTTCAAGTCGATAATTCATCGTTATGTATTTTCATTTGTGGCATCCTTTCATGTCGA
65 TGGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGA
*
44690 TAATGCA-T
130 TAATGCACC
* * * *
44698 GTTATGCATTTTCGTTTGTGGCATCATTTCATGCCGATAATGCACCATTATGCATTTTCATTTGT
1 GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCATTTGT
* * * *
44763 -GCATCCTTTCATGCC-ATAATGCATTGTTATACATTTTCATTTGTGGCATCCTTTCATGCCAAT
66 GGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGAT
*
44826 AATGCATC
131 AATGCACC
** *
44834 GTTACACATTTTCGTTTGT
1 GTTATGCATTTTTGTTTGT
44853 TCATTCATTT
Statistics
Matches: 478, Mismatches: 87, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
135 48 0.10
136 27 0.06
137 55 0.12
138 220 0.46
139 2 0.00
141 1 0.00
142 1 0.00
143 2 0.00
144 2 0.00
145 1 0.00
146 1 0.00
147 1 0.00
148 2 0.00
149 115 0.24
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (138 bp):
GTTATGCATTTTTGTTTGTGGCATCCTTTCATGTCGATAATGCACCGTTATGCATTTTCATTTGT
GGCATCCTTTCATGCCGATAATGCATCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGAT
AATGCACC
Found at i:44428 original size:57 final size:57
Alignment explanation
Indices: 44353--44476 Score: 162
Period size: 57 Copynumber: 2.2 Consensus size: 57
44343 CCCTTTCATG
* * * *
44353 CCGATAATGCATCATTATGCATTTTTGTTTGTGGTATCCTTTCATG-CTAATAACGCA
1 CCGATAATGCACCATTATGCAATTTTGTTTGTAGCATCCTTTCATGTC-AATAACGCA
* * *
44410 CCGATAATGCACCGTTATGCAATTTTGTTTGTAGCATCCTTTCATGTCGATAATGCA
1 CCGATAATGCACCATTATGCAATTTTGTTTGTAGCATCCTTTCATGTCAATAACGCA
44467 CCG-TAATGCA
1 CCGATAATGCA
44477 TTTTCATTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 7 0.12
57 51 0.86
58 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (57 bp):
CCGATAATGCACCATTATGCAATTTTGTTTGTAGCATCCTTTCATGTCAATAACGCA
Found at i:49163 original size:28 final size:28
Alignment explanation
Indices: 49123--49177 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
49113 CGTTAAACGT
49123 TGGGGCATTTCTTCCACAGAATGGAGGC
1 TGGGGCATTTCTTCCACAGAATGGAGGC
49151 TGGGGCATTTCTTCCACAGAATGGAGG
1 TGGGGCATTTCTTCCACAGAATGGAGG
49178 AAAATCCCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (28 bp):
TGGGGCATTTCTTCCACAGAATGGAGGC
Found at i:49583 original size:2 final size:2
Alignment explanation
Indices: 49576--49600 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49566 ATTCTTCAAT
49576 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
49601 TAAACACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50227 original size:46 final size:46
Alignment explanation
Indices: 50184--50927 Score: 821
Period size: 46 Copynumber: 16.4 Consensus size: 46
50174 TTTATGTCGT
* * * *
50184 TAATGCATCGTTATACATTTTTATTTGTGGCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * * * *
50230 TAATACACCGTTATGTATTTT--TTTATGGCATCCTTTCAGGCCAA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * ** *
50274 TAATGCACCGTTATGCATTTTCAATTATGGCATCCTTTCACACTGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * * * * *
50320 TAATGTACCATTATGCATTTTAATTTGTGGTAGCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * * *
50366 TAATGCACCGTTATTCATTTTAATTTATGGCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
** * *
50412 TAATATACCATTATGCATTTTCATTTGTGGCATCATTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* *
50458 TAATGCACCGTTATGCATTTTCGTTTATGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
*
50504 TAATGCACCATTATGCATATTT-ATTTGTGGCATCCTTTCATG-C--
1 TAATGCACCGTTATGCAT-TTTCATTTGTGGCATCCTTTCATGCCGA
* ** * *
50547 --AT-----GTTCTGCATTTTTGTTTGTGGCATCCTTTTATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
** **
50586 TAATGCAATGTTATGCATTTTCATTTGTCCCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * * * *
50632 TAATACACTGTTATGTATTTTCATTTGTAGCATCCTTTTATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
** * *
50678 TAATGCACCGTTATATATTTTCATTTGTGGCATCTTTTCATACCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
** * *
50724 TAATGCACCGTTATGCATTTTTGTTTATGACATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* ** *
50770 TAATGCACCGTTATGCATTTTCGTTTGTATCATCCTTTCTTGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
*
50816 TAATGCACCGTTATGCATTTTCGTTTGTGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
* * **
50862 TAATGCACTGTTATGCATTTTCATTTGTGGCATCATTTCATGCTTA
1 TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
*
50908 TAATGCACCATTATGCATTT
1 TAATGCACCGTTATGCATTT
50928 GTGTTTGTTC
Statistics
Matches: 588, Mismatches: 96, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.01
36 25 0.04
37 1 0.00
41 4 0.01
44 38 0.06
45 1 0.00
46 513 0.87
47 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (46 bp):
TAATGCACCGTTATGCATTTTCATTTGTGGCATCCTTTCATGCCGA
Found at i:52268 original size:20 final size:20
Alignment explanation
Indices: 52205--52277 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
52195 TATTGAGTAC
*
52205 TATCGATACCGATTTAAG-TGG
1 TATCGATACC-A-TGAAGATGG
* *
52226 TATCTATACCAAGAAGA-GAG
1 TATCGATACCATGAAGATG-G
*
52246 TATCGATACCATGAGGATGG
1 TATCGATACCATGAAGATGG
*
52266 TATAGATACCAT
1 TATCGATACCAT
52278 TGATCATAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 4 0.10
20 28 0.67
21 10 0.24
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (20 bp):
TATCGATACCATGAAGATGG
Found at i:52338 original size:19 final size:19
Alignment explanation
Indices: 52295--52367 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
52285 AGAATGGAAA
* * *
52295 ATAGTATCGGTACCGTAAT
1 ATAGTATCGATACCATAGT
*
52314 AGAGTATCGATACCATAGTAT
1 ATAGTATCGATACCATAG--T
*
52335 AGTAGTATCGATACCATGGT
1 A-TAGTATCGATACCATAGT
*
52355 ATGGTATCGATAC
1 ATAGTATCGATAC
52368 TAGTGAGCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 25 0.57
20 2 0.05
21 2 0.05
22 15 0.34
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (19 bp):
ATAGTATCGATACCATAGT
Found at i:52344 original size:22 final size:21
Alignment explanation
Indices: 52312--52367 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
52302 CGGTACCGTA
52312 ATAGAGTATCGATACCATAGT
1 ATAGAGTATCGATACCATAGT
*
52333 ATAGTAGTATCGATACCATGGT
1 ATAG-AGTATCGATACCATAGT
52355 AT-G-GTATCGATAC
1 ATAGAGTATCGATAC
52368 TAGTGAGCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 10 0.30
21 5 0.15
22 18 0.55
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (21 bp):
ATAGAGTATCGATACCATAGT
Found at i:52837 original size:55 final size:55
Alignment explanation
Indices: 52705--52911 Score: 267
Period size: 55 Copynumber: 3.8 Consensus size: 55
52695 TAAGCGTGCA
* *
52705 AAAACTTAAGAAATCCATACTAAGTGTATTAA-TTTCTGTATGGGCACTTTGTGT-G
1 AAAAC-TAAGAAATCCATACTAAGTGTATGAATTTTC-GTATGGGCACTATGTGTGG
** * *
52760 -AAACTAAGAAATTGATACTAAGTGTTTGAATTTTCGTATGGACACTATGTGTGG
1 AAAACTAAGAAATCCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTGG
* * *
52814 AAAACTAAGAAATCCATAGTAAGTGTATGAATTTTCGTACGGGCACTATGTGTGC
1 AAAACTAAGAAATCCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTGG
* * *
52869 AAAACTAAGAAATCTATACTAAGTGTAAGAATTTCCGTATGGG
1 AAAACTAAGAAATCCATACTAAGTGTATGAATTTTCGTATGGG
52912 AAATATATGC
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
53 37 0.28
54 9 0.07
55 85 0.65
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (55 bp):
AAAACTAAGAAATCCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTGG
Found at i:53224 original size:47 final size:46
Alignment explanation
Indices: 53153--53244 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 46
53143 TAAATGTGTT
* * *
53153 AATTATGCAGTTAGATTAATGGTTAAAGACTATTGAGTAAAAGATC
1 AATTATGCAGTTAGATAAACGGTTAAAGACTATGGAGTAAAAGATC
*
53199 AATTATGCTAGTTAGATAAACGGTTAAAGACTGTGGAGTAAAAGAT
1 AATTATGC-AGTTAGATAAACGGTTAAAGACTATGGAGTAAAAGAT
53245 AAATGGCCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 8 0.20
47 33 0.80
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (46 bp):
AATTATGCAGTTAGATAAACGGTTAAAGACTATGGAGTAAAAGATC
Found at i:53333 original size:81 final size:81
Alignment explanation
Indices: 53197--53874 Score: 837
Period size: 81 Copynumber: 8.4 Consensus size: 81
53187 GAGTAAAAGA
* * * *
53197 TCAATTATGCTAGTTAGATAAACGGTTAAAGACTGTGGAGTAAAAGATAAATGGCCTAGTTGTGC
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
* *
53262 ACTTGACAGAAAGGTG
66 ATTTGGCAGAAAGGTG
* *
53278 ACAATTATGCCAGTTAGATGAATGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
*
53343 ACTTT-GTAGAAAGGTG
66 A-TTTGGCAGAAAGGTG
* * * * * *
53359 TCAGTTAAGTCAGTTAGATGAAAGGTTAAAGATCGTTGAGAAAAAGATAAATGGCCTAGTTGTGC
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
* * * *
53424 ACTTAGTA-AGAATGTG
66 ATTTGGCAGA-AAGGTG
* *
53440 TCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAA-ATTAAATGGGCTAGTTGTG
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGA-TAAATGGCCTAGTTGTG
53504 CATTTGGCAGAAAGGTG
65 CATTTGGCAGAAAGGTG
* * * * * * *
53521 TCAATTATGCCAGTTAGATGGACGGTTAAAGATCGTTGACTAAAAGACAAATGACCTAGCTGTGT
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
*
53586 ATTTGGCATAAAGGT-
66 ATTTGGCAGAAAGGTG
* * * *
53601 TCCAATTATG-CAGTTAGATGAACGGATAAAGACCATTGAGTAAAAGATAAATGGCCTAGCTATG
1 T-CAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTG
* *
53665 CATTTGGCATAAAGTTG
65 CATTTGGCAGAAAGGTG
* * *
53682 TCAATTATGCCAGTTAAGATGAACGGTTAAAAACCGTTGAGTAAAAGGTAAATGGCCTAGCTGTG
1 TCAATTATGCCAGTT-AGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTG
*
53747 CATTTGGCATAAAGGTG
65 CATTTGGCAGAAAGGTG
** * *
53764 TCAATTATGAAAGTTAGATGAACGGTTAAAGACCATTGAGTAAAAGATAAATGGTCTAGTTGTGC
1 TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
*
53829 ATTTGGTAGAACA-GTG
66 ATTTGGCAGAA-AGGTG
* * *
53845 TCAATCATGCAAGTTAGATGAAAGGTTAAA
1 TCAATTATGCCAGTTAGATGAACGGTTAAA
53875 TGCATTTGGG
Statistics
Matches: 518, Mismatches: 68, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
80 73 0.14
81 367 0.71
82 78 0.15
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (81 bp):
TCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTGTGC
ATTTGGCAGAAAGGTG
Found at i:57177 original size:46 final size:46
Alignment explanation
Indices: 57127--57823 Score: 694
Period size: 46 Copynumber: 15.4 Consensus size: 46
57117 TTTATCTCGT
* * *
57127 TAATGCATCGTTATACATTTTTGTTTGTGGCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * * * * *
57173 TAATGCACCATTATGCATTTTTGTTTGTGGAATCTTTTCAAGTAGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * *
57219 TAATTCACCGTTATGCATTTTCATTTGTGGCATCCTTTCA-CTCTGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTC-GA
* * * *
57265 TAATGCACCGTTATACATTTTCATTTGTGGTATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * *
57311 TAATGCATCGTTATGCATTTTAATTTTTGGCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * *
57357 TAATGCACCATTATGC-TTTTTCATTTATGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTT-ATTTGTGGCATCCTTTCATGTCGA
* * * * *
57403 TAATGCACCGTTATGTATTTTTGTTTATGGCATCCTTTCACGCCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* *
57449 TAATGCACCATTATGCATTTTCATTTGTGGCATCCTTTCATG-C--
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
** *
57492 --AT-----GTTATGCATTTTCGTTTG-GGCATCCTTTAAAT-TCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTT-CATGTCGA
** * *
57530 TAATGCAATGTTATGCATTTTCATTTGTGTCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * *
57576 TAACGCACTGTTATGCATTTTTATTTGTGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * * *
57622 TAATTCACCGTTATGCATTTTTGTTTATGGCATCCTTTCATATCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * * ** * *
57668 TAATGCACCGTTATACATTTTCATTTGTGTC-TTTTTTCTTGCCGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
* * *
57713 TAATGCACCCTTATGCATTTTCT-TTTATGGCATCC-TTCTATGCCGA
1 TAATGCACCGTTATGCATTTT-TATTTGTGGCATCCTTTC-ATGTCGA
* * *
57759 TAATGCACCG-TATGCATTTTCATTTGTGGGATCATTTCATG-CTGA
1 TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTC-GA
*
57804 TAATGCACTGTTATGCATTT
1 TAATGCACCGTTATGCATTT
57824 GTGTTTGTTC
Statistics
Matches: 543, Mismatches: 84, Indels: 48
0.80 0.12 0.07
Matches are distributed among these distances:
35 10 0.02
36 19 0.03
40 2 0.00
41 2 0.00
44 1 0.00
45 95 0.17
46 408 0.75
47 6 0.01
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.43
Consensus pattern (46 bp):
TAATGCACCGTTATGCATTTTTATTTGTGGCATCCTTTCATGTCGA
Found at i:57806 original size:91 final size:91
Alignment explanation
Indices: 57494--57823 Score: 341
Period size: 91 Copynumber: 3.6 Consensus size: 91
57484 TTTCATGCAT
* * * * ** * *
57494 GTTATGCATTTTCGTTTG-GGCATCCTTTAAAT-TCGATAATGCAATGTTATGCATTTTCATTTG
1 GTTATGCATTTTCATTTGTGGCATCATTT-CATGCCGATAATGCACCGTTATGCATTTTCTTTTA
* * *
57557 TGTCATCCTT-TCATGTCGATAACGCACT
65 TGGCATCCTTCT-ATG-CGATAATGCACC
* * *
57585 GTTATGCATTTTTATTTGTGGCATCCTTTCATGCCGATAATTCACCGTTATGCATTTT-TGTTTA
1 GTTATGCATTTTCATTTGTGGCATCATTTCATGCCGATAATGCACCGTTATGCATTTTCT-TTTA
57649 TGGCATCCTTTCATAT-CGATAATGCACC
65 TGGCATCC-TTC-TATGCGATAATGCACC
* * ** * *
57677 GTTATACATTTTCATTTGTGTC-TTTTTTCTTGCCGATAATGCACCCTTATGCATTTTCTTTTAT
1 GTTATGCATTTTCATTTGTGGCATCATTTCATGCCGATAATGCACCGTTATGCATTTTCTTTTAT
57741 GGCATCCTTCTATGCCGATAATGCACC
66 GGCATCCTTCTATG-CGATAATGCACC
* * *
57768 G-TATGCATTTTCATTTGTGGGATCATTTCATGCTGATAATGCACTGTTATGCATTT
1 GTTATGCATTTTCATTTGTGGCATCATTTCATGCCGATAATGCACCGTTATGCATTT
57824 GTGTTTGTTC
Statistics
Matches: 200, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
89 3 0.01
90 20 0.10
91 101 0.50
92 71 0.35
93 2 0.01
94 2 0.01
95 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.44
Consensus pattern (91 bp):
GTTATGCATTTTCATTTGTGGCATCATTTCATGCCGATAATGCACCGTTATGCATTTTCTTTTAT
GGCATCCTTCTATGCGATAATGCACC
Found at i:59158 original size:20 final size:20
Alignment explanation
Indices: 59113--59167 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
59103 CTGATTCAAG
* *
59113 TGGTATCTATACCAAGAAGA
1 TGGTATCGATACCATGAAGA
*
59133 -GAGTATCGATACCATGAGGA
1 TG-GTATCGATACCATGAAGA
*
59153 TGGTATAGATACCAT
1 TGGTATCGATACCAT
59168 TGATCATAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (20 bp):
TGGTATCGATACCATGAAGA
Found at i:59673 original size:55 final size:55
Alignment explanation
Indices: 59596--59806 Score: 291
Period size: 55 Copynumber: 3.8 Consensus size: 55
59586 ACTAAGCGTG
* *
59596 GAAAAACTTAAGAAATCTGTACTAAGTGTATGAATTTTCGTATGGGCACTTTGTGT
1 GAAAAAC-TAAGAAATCTATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGT
* * *
59652 GAAAAACTAAGAAAT-TCGTACTAAGTGTTTGAATTTTCGTATGGACACTATGTGT
1 GAAAAACTAAGAAATCT-ATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGT
* * *
59707 GCAAAACTAAGAAATCCATACTAAGTGTATGAATTTCCGTATGGGCACTATGTGT
1 GAAAAACTAAGAAATCTATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGT
* *
59762 GCAAAACTAAGAAATCTATACTAAGTATCA-GAATTTTCGTATGGG
1 GAAAAACTAAGAAATCTATACTAAGTGT-ATGAATTTTCGTATGGG
59807 AAATACATGT
Statistics
Matches: 140, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
54 1 0.01
55 131 0.94
56 8 0.06
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (55 bp):
GAAAAACTAAGAAATCTATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGT
Found at i:60129 original size:81 final size:81
Alignment explanation
Indices: 60026--60909 Score: 1144
Period size: 81 Copynumber: 10.9 Consensus size: 81
60016 TAGGCTTAAC
** * *
60026 TGTGCATTTGATAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
*
60091 AGATAAAGGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * *
60107 TCTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAATGGTTAAAGATCATTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
60172 AGATAAATGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * *
60188 TGTGCACTTGGCAGAAAGGTG-CGAATTATGCCAGTTAGATAAATGGTTAAAGACCATCGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTC-AATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAA
*
60252 AAGATAAATGGCCTAGC
65 AAGATAAATGGCCTAGT
* * ** *
60269 TGTGCACTTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAACGACTAAAGACTGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
60334 AGATAAATGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * * *
60350 TGTGCACTTGGCAAAAAGGTGCCAGTTATGCCAGTTAGATGAATGGTTAAAGACCATTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
60415 AGATAAATGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * *
60431 TGTGCACTTAGCAAAAGAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGTTGTGTAA
1 TGTGCATTTGGCAGAA-AGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAA
60496 AAGATAAATGGCCTAGT
65 AAGATAAATGGCCTAGT
* * *
60513 TGTGCATTTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAACGGTTAAAAATCGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
* * *
60578 AGACAAATGACCTAGC
66 AGATAAATGGCCTAGT
** * * *
60594 TGTTTATTTGGTAGAAAGGTGCCAATTATG-CAGTTAGATGAACAGTTAAAGACCGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
* *
60658 AGATAAATGTCCTAGC
66 AGATAAATGGCCTAGT
* *
60674 TGTGCATTTGGCAGAAAGTTGTCAATTATGCCAGTTAAGATGAACGGTTAAAAACCGTTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTT-AGATGAACGGTTAAAGACCGTTGAGTAA
* *
60739 AAGATAAATGACCTAGC
65 AAGATAAATGGCCTAGT
* * * * **
60756 TATGCATTTGGCATAATGGTGCCAATTATGCCAAATAGATGAACGGTTAAAGACCGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
*
60821 AGATAAATGGTCTAGT
66 AGATAAATGGCCTAGT
* * * * * *
60837 TGTGCATTTGGCAGAAAAGTGTCAATCATGCAAGTTAGATGAAAGGTTAAATG-CCTTTGGGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAA-GACCGTTGAGTAA
60901 AAGACTAAA
65 AAGA-TAAA
60910 GGAATTATAA
Statistics
Matches: 705, Mismatches: 91, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
80 71 0.10
81 485 0.69
82 149 0.21
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (81 bp):
TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAA
AGATAAATGGCCTAGT
Found at i:64727 original size:24 final size:24
Alignment explanation
Indices: 64695--64741 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
64685 GCATGGCATT
64695 GTACATAGATGTTTTATACATCAC
1 GTACATAGATGTTTTATACATCAC
64719 GTACATAGATGTTTTATACATCA
1 GTACATAGATGTTTTATACATCA
64742 TCATGATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCAC
Found at i:67912 original size:25 final size:24
Alignment explanation
Indices: 67884--67936 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 24
67874 AAAAGAAATT
67884 AAAAAAGAAAGAAGAAAAAAAAAGGA
1 AAAAAAG-AAGAAG-AAAAAAAAGGA
*
67910 AAAAAAGAAGAAGAATAAAAAGGA
1 AAAAAAGAAGAAGAAAAAAAAGGA
67934 AAA
1 AAA
67937 GAAAAAGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 13 0.50
25 6 0.23
26 7 0.27
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (24 bp):
AAAAAAGAAGAAGAAAAAAAAGGA
Found at i:67936 original size:6 final size:6
Alignment explanation
Indices: 67885--67967 Score: 57
Period size: 6 Copynumber: 13.8 Consensus size: 6
67875 AAAGAAATTA
* * * *
67885 AAAAAG AAAGAAG AAAAA- AAAAGG AAAAA- AAGAAG AAGAAT AAAAAG
1 AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
*
67932 GAAAAG AAAAAG CAAAAA- ACAAAA- AACAAAG AAAAA
1 AAAAAG AAAAAG -AAAAAG A-AAAAG AA-AAAG AAAAA
67968 CTATGAGAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
5 10 0.16
6 39 0.63
7 13 0.21
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:73156 original size:53 final size:53
Alignment explanation
Indices: 73021--73225 Score: 214
Period size: 55 Copynumber: 3.8 Consensus size: 53
73011 TAAGCGTGCA
* * * * * *
73021 AAAACTTAAGAAATACATACTAAGTGTATGAATTTCCGTATGGCCATTTTGTGTGC
1 AAAAC-TAAGAAATTCATACTAAGTGTATGAATTTTCGTATGGACA--CTATGTAC
* *
73077 AAAACTAATAAATTCATACTAAGTGTATAAATTTTCGTATGGACACTATGTAC
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATGGACACTATGTAC
* * * * *
73130 AAAACTAAGAATTTCTTACTAAGTGTATGAA-TTTCTATATGGGCACTATGTATGT
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTTC-GTATGGACACTATGTA--C
* *
73185 AAAACTAAGAAATCCATACTACGTGTATGAATTTTCGTATG
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATG
73226 CGAAATATAT
Statistics
Matches: 125, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 46 0.37
55 66 0.53
56 9 0.07
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (53 bp):
AAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATGGACACTATGTAC
Found at i:73544 original size:81 final size:81
Alignment explanation
Indices: 73459--74383 Score: 1101
Period size: 81 Copynumber: 11.5 Consensus size: 81
73449 CGCATTTGAT
* * * ** ** *
73459 AGAAAGATGTTAATTATTCCAGTTAGATTTACAATTAAAGACCGTTGAGTAAAAGATAAAGGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
* *
73524 TAGTTGTGCATTTGGA
66 TAGTTGTGCACTTGGC
73540 AGAAAGGTGTCAATTATG-CAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
73604 TAGTTGTGCACTTGGC
66 TAGTTGTGCACTTGGC
* * * * * *
73620 AGAAATGTGTCAATTATGCCAGCTAGATGAACAGTTAAAGGCCGTTGAGGAAGAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
* *
73685 TAGATGTGCACTTGGT
66 TAGTTGTGCACTTGGC
* * * * * *
73701 AGACAGATGTCAATTACT-CCAGTTAAATGAATGGTTAAAGACCATTGAGCAAAAGATAAATGGC
1 AGAAAGGTGTCAATTA-TGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGC
*
73765 CTAGTTGTGCACTTGGA
65 CTAGTTGTGCACTTGGC
* *
73782 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCATAGAGTAAAAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
*
73847 TAGATGTGCACTTGGC
66 TAGTTGTGCACTTGGC
* * * * *
73863 AGGAAGGTGCCAATTATGCCAGTTAGATGAATGGTTAAAGACTGTTGAGTAAATGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
* * *
73928 TAGCTGTGTATTTGGC
66 TAGTTGTGCACTTGGC
* * * *
73944 AGAAATGTGTCAATTTTGCTAGTTAGATGAACTGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
*
74009 TAGTTGTGCACTTGGA
66 TAGTTGTGCACTTGGC
* * * ** *
74025 AGAAATGTGTCAATTATGTCAATTAGATGAACGGTTAAAGATAGTTAAGTAAAAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
* *
74090 TAGCTGTGCACTTGAC
66 TAGTTGTGCACTTGGC
* * *
74106 AGAAATGTG-CAAATTATGCCAGTTAGATGAACGATT-AAGACTGTTGAGT-AAAGATAAATGGC
1 AGAAAGGTGTC-AATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGC
* *
74168 CTAG--CTGCATTTGGC
65 CTAGTTGTGCACTTGGC
* * * * *
74183 AGAAAGGTGTC-ATTATGCTAGTTAGATGAATGGTTAAAGATCGTTTAGTAAAAGATAAATGACC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
** *
74247 TTAACTGTGCATTTGGC
66 -TAGTTGTGCACTTGGC
* * * *
74264 AGAAAGGTGTTAATTATGCCAGTTAGATTAACGGTTAAAGACTGTTTAGTAAAAGATAAATGGCC
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
* *
74329 TAGTTGTGTATTTGGC
66 TAGTTGTGCACTTGGC
* * * ** *
74345 AGAAAAGTATCAATCATGTAAGTTAGATGAAAGGTTAAA
1 AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAA
74384 TGTCTTTGGG
Statistics
Matches: 723, Mismatches: 110, Indels: 22
0.85 0.13 0.03
Matches are distributed among these distances:
76 21 0.03
77 26 0.04
78 14 0.02
79 19 0.03
80 84 0.12
81 511 0.71
82 48 0.07
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (81 bp):
AGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCC
TAGTTGTGCACTTGGC
Found at i:76075 original size:166 final size:168
Alignment explanation
Indices: 75801--76134 Score: 654
Period size: 166 Copynumber: 2.0 Consensus size: 168
75791 ATTTCCCTCT
75801 AAAGGACCAAAATACCTTTTCATTTTTCCATTCTTACAAATTGGTCTTAATTAAATCATTTCTTA
1 AAAGGACCAAAATACCTTTTCATTTTTCCATTCTTACAAATTGGTCTTAATTAAATCATTTCTTA
75866 TACTATACCATTTATTTAATTTAATCCTCCATATTTTAAATCCTTTC-ATATAGTCACTAACCTG
66 TACTATACCATTTATTTAATTTAATCCTCCATATTTTAAATCCTTTCAATATAGTCACTAACCTG
75930 ATG-TTGGGATATTACAGGATCTCACCCAAATACCCGA
131 ATGTTTGGGATATTACAGGATCTCACCCAAATACCCGA
75967 AAAGGACCAAAATACCTTTTCATTTTTCCATTCTTACAAATTGGTCTTAATTAAATCATTTCTTA
1 AAAGGACCAAAATACCTTTTCATTTTTCCATTCTTACAAATTGGTCTTAATTAAATCATTTCTTA
76032 TACTATACCATTTATTTAATTTAATCCTCCATATTTTAAATCCTTTCAATATAGTCACTAACCTG
66 TACTATACCATTTATTTAATTTAATCCTCCATATTTTAAATCCTTTCAATATAGTCACTAACCTG
76097 ATGTTTGGGATATTACAGGATCTCACCCAAATACCCGA
131 ATGTTTGGGATATTACAGGATCTCACCCAAATACCCGA
76135 GGGTATTTTA
Statistics
Matches: 166, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
166 112 0.67
167 20 0.12
168 34 0.20
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.39
Consensus pattern (168 bp):
AAAGGACCAAAATACCTTTTCATTTTTCCATTCTTACAAATTGGTCTTAATTAAATCATTTCTTA
TACTATACCATTTATTTAATTTAATCCTCCATATTTTAAATCCTTTCAATATAGTCACTAACCTG
ATGTTTGGGATATTACAGGATCTCACCCAAATACCCGA
Found at i:78362 original size:118 final size:117
Alignment explanation
Indices: 78016--78499 Score: 416
Period size: 118 Copynumber: 4.1 Consensus size: 117
78006 TATCTTTGCT
* * * * *
78016 CCTTTGGATGAGTTCTTATCATTATGAA-CTTTACATT-GAAAATATTGATCCACCTCATTCTGT
1 CCTTCGGATGAGTTCTTCTCATTATGAACCCTT-CATTAG-AAATGTTGATCCACCTCTTTCTGT
* *
78079 GATGGATTTGATAAAATGTTGAATAAGTT-TTCCTCATTATGAA-TT-TTTTTCC
64 GATGGATTTGAGAAAATGTTGAATAAGTTCTT-CTCATTATGAACTTCTTCTTCC
* * * * * *
78131 CTCATC-GATCAAGTTCTTCTCATCATGAACTCCTTCATTAAAAATGTTGATCAACAT-TCTTCT
1 C-CTTCGGAT-GAGTTCTTCTCATTATGAAC-CCTTCATTAGAAATGTTGATCCACCTCT-TTCT
* * * * * * * * *
78194 GCGATGGATTGGAGTAAAGGTTCAACAAGTTCTTCTTATAATGAATTTCTTCTTCC
62 GTGATGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCC
* *
78250 CCTTCGGATGAGTTCTTCTCATTATGAACCATTTCATTAGAAATGTTGATCCACCTCTTTTTGTG
1 CCTTCGGATGAGTTCTTCTCATTATGAACC-CTTCATTAGAAATGTTGATCCACCTCTTTCTGTG
* * * * *
78315 ATGGATTTGAGAAAATGATGAATACGTTCTTATCATTATGAGCTTCTTATTTCC
65 ATGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTT-CTTCC
* * * *
78369 CATT-GGACGAGTT-TTCCTCATTATGAATCCCTTCATTGGAAATGTTGATCCACGTCCTTT-TG
1 CCTTCGGATGAGTTCTT-CTCATTATGAA-CCCTTCATTAGAAATGTTGATCCACCT-CTTTCTG
* * *
78431 TGGTGGATTTGAAGAAAA-GCTGAATAAGTTCTTCTCATTATGAACTTTTTC-TCC
63 TGATGGATTTG-AGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCC
* *
78485 CTCTCCGGATAAGTT
1 C-CTTCGGATGAGTT
78500 ATCATCATGA
Statistics
Matches: 291, Mismatches: 59, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
115 4 0.01
116 22 0.08
117 58 0.20
118 177 0.61
119 30 0.10
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.40
Consensus pattern (117 bp):
CCTTCGGATGAGTTCTTCTCATTATGAACCCTTCATTAGAAATGTTGATCCACCTCTTTCTGTGA
TGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCC
Found at i:80236 original size:118 final size:117
Alignment explanation
Indices: 79940--80417 Score: 406
Period size: 118 Copynumber: 4.1 Consensus size: 117
79930 TGCTCCTTTA
* * *
79940 GATGAGTTCTTATCATTATGAA-CTTTACATT-GAAAATATTGATCCACCTCATTCTGTGATGGA
1 GATGAGTTCTTCTCATTATGAACCCTT-CATTAG-AAATATTGATCCACCTCTTTCTGTGATGGA
* *
80003 TTTGA-TAAAATGTTGAATAAGTT-TTCCTCATTATGAACTTTT-TTCCCTCATC-
64 TTGGAGT-AAATGTTGAATAAGTTCTT-CTCATTATGAACTTTTCTTCCCTCTTCG
* * * * * * * *
80055 GATCAAGTTCTTCTCATCATGAACTCCTTCTTTAAAAATGTTGATCAACAT-TCTTCTGCGATGG
1 GAT-GAGTTCTTCTCATTATGAAC-CCTTCATTAGAAATATTGATCCACCTCT-TTCTGTGATGG
* * * * *
80119 ATTGGAGTAAAGGTTCAACAAGTTCTTCTCATAATGAATTTCTTCTTCCC-CTTCG
63 ATTGGAGTAAATGTTGAATAAGTTCTTCTCATTATGAACTT-TTCTTCCCTCTTCG
* *
80174 GATGAGTTCTTCTCATTATGAACCATTTCATTAGAAATATTGATCCACCTCTTTTTGTGATGGAT
1 GATGAGTTCTTCTCATTATGAACC-CTTCATTAGAAATATTGATCCACCTCTTTCTGTGATGGAT
* * * * * * *
80239 TTGAGAAAATGTTGAATACGTTCTTATCATTATGAGCTTCTTATTTCCC-ATT-G
65 TGGAGTAAATGTTGAATAAGTTCTTCTCATTATGAACTT-TT-CTTCCCTCTTCG
* * * *
80292 GACGAGTTTTTCTCATTATGAATCCCTTCATTGGAAATGTTGATCCACCTCCTTT-TGTGATGGA
1 GATGAGTTCTTCTCATTATGAA-CCCTTCATTAGAAATATTGATCCACCT-CTTTCTGTGATGGA
* * * *
80356 TTTGAAG-AAAAGCTGAATAAGTTCTTCTCATTATGAACTTTT-TCTCCCTCTCCG
64 -TTGGAGTAAATGTTGAATAAGTTCTTCTCATTATGAACTTTTCT-TCCCTCTTCG
*
80410 GATAAGTT
1 GATGAGTT
80418 ATCATCATGA
Statistics
Matches: 288, Mismatches: 56, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
115 4 0.01
116 20 0.07
117 60 0.21
118 178 0.62
119 26 0.09
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (117 bp):
GATGAGTTCTTCTCATTATGAACCCTTCATTAGAAATATTGATCCACCTCTTTCTGTGATGGATT
GGAGTAAATGTTGAATAAGTTCTTCTCATTATGAACTTTTCTTCCCTCTTCG
Found at i:82197 original size:118 final size:117
Alignment explanation
Indices: 81851--82317 Score: 461
Period size: 118 Copynumber: 4.0 Consensus size: 117
81841 TCTCTTTGCT
* * * * *
81851 CCTTTGGATGAGTTCTTATCATTATGAA-CTTTACATT-GAAAATATTGATCCACCTCATTCTGT
1 CCTTCGGATGAGTTCTTCTCATTATGAACCCTT-CATTAG-AAATGTTGATCCACCTCTTTCTGT
*
81914 GATGGATTTGATAAAATGTTGAATAAGTT-TTCCTCATTATGAACTT-TT-TTCC
64 GATGGATTTGAGAAAATGTTGAATAAGTTCTT-CTCATTATGAACTTCTTCTTCC
* * * * * *
81966 CTCATC-GATCAAGTTCTTCTCATCATGAACTCCTTCATTAAAAATGTTGATCAACAT-TCTTCT
1 C-CTTCGGAT-GAGTTCTTCTCATTATGAAC-CCTTCATTAGAAATGTTGATCCACCTCT-TTCT
* * * * * * * *
82029 GCGATGGATTGGAGTAAAGGTTCAACAAGTTCTTCTCATAATGAATTTCTTCTTCC
62 GTGATGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCC
* *
82085 CCTTCGGATGAGTTCTTCTCATTATGAACCATTTCATTAGAAATGTTGATCCACCTCTTTTTGTG
1 CCTTCGGATGAGTTCTTCTCATTATGAACC-CTTCATTAGAAATGTTGATCCACCTCTTTCTGTG
** * * *
82150 ATGGATTTGAGAAAATGTTGAATACTTTCTTATCATTATGAGCTTCTTATTTCC
65 ATGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTT-CTTCC
* * *
82204 CATT-GGACGAGTT-TTCCTCATTATGAATCCCTTCATTGGAAATGTTGATCCACCTCCTTT-TG
1 CCTTCGGATGAGTTCTT-CTCATTATGAA-CCCTTCATTAGAAATGTTGATCCACCT-CTTTCTG
*
82266 TGATGGATTTGAAGAAAAT-TTGAATAAGTTCTTCTCATTATGAACTTTTTCT
63 TGATGGATTTG-AGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCT
82318 CCCTCTCTGG
Statistics
Matches: 284, Mismatches: 51, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
115 4 0.01
116 18 0.06
117 61 0.21
118 172 0.61
119 29 0.10
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (117 bp):
CCTTCGGATGAGTTCTTCTCATTATGAACCCTTCATTAGAAATGTTGATCCACCTCTTTCTGTGA
TGGATTTGAGAAAATGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCC
Found at i:84339 original size:16 final size:17
Alignment explanation
Indices: 84318--84355 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
84308 TTTAAACAAG
84318 TATTATTTACTT-ATTT-
1 TATTATTTA-TTGATTTA
84334 TATTATTTATTGATTTA
1 TATTATTTATTGATTTA
84351 TATTA
1 TATTA
84356 ATGAATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 13 0.65
17 5 0.25
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (17 bp):
TATTATTTATTGATTTA
Found at i:86767 original size:45 final size:45
Alignment explanation
Indices: 86666--87022 Score: 414
Period size: 45 Copynumber: 7.9 Consensus size: 45
86656 ATTAATGCTT
* * * *
86666 ATAATGCA-CCATTATGCATTTTTATTTATAGAATCCTTTCATGCCG
1 ATAATGCACCCA-TATGCA-TTTCAATTATGGCATCCTTTCATGCCG
* * *
86712 ATAATGCACCCATATGCATTTCAATTATGGCAACCTTTCATTCTG
1 ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
* *
86757 ATAATACACCCATATGCATTTCAATTATAGCATCCTTTCATGCCG
1 ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
* *
86802 ATAATGCACCCATATGCTTTTCAATTATGGCATCCTTTCATGTCG
1 ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
*
86847 ATAATGCACCCATATGCATTTTAATTATGGCATCCTTTCATGCCG
1 ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
* * * *
86892 ATAATGCAACCAAATGCATTTTAATTATGGCATCCTTTCATGCAG
1 ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
* * * * *
86937 ATAATACA-CTATTATACATTTCATTTATGGCATCCTTTCATGCCT
1 ATAATGCACCCA-TATGCATTTCAATTATGGCATCCTTTCATGCCG
* * * * * *
86982 TTTATACA-CTATTATACATTTCATTTATGGCATCCTTTCAT
1 ATAATGCACCCA-TATGCATTTCAATTATGGCATCCTTTCAT
87023 ACCTTTTATA
Statistics
Matches: 277, Mismatches: 32, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
44 2 0.01
45 258 0.93
46 14 0.05
47 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (45 bp):
ATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCG
Found at i:87087 original size:45 final size:45
Alignment explanation
Indices: 86916--87079 Score: 247
Period size: 45 Copynumber: 3.6 Consensus size: 45
86906 TGCATTTTAA
*** *
86916 TTATGGCATCCTTTCATGCAGATAATACACTATTATACATTTCAT
1 TTATGGCATCCTTTCATGCCTTTTATACACTATTATACATTTCAT
86961 TTATGGCATCCTTTCATGCCTTTTATACACTATTATACATTTCAT
1 TTATGGCATCCTTTCATGCCTTTTATACACTATTATACATTTCAT
* * **
87006 TTATGGCATCCTTTCATACCTTTTATACATTATTATATGTTTCAT
1 TTATGGCATCCTTTCATGCCTTTTATACACTATTATACATTTCAT
87051 TTATGGCATCCTTTCATGCCTTTATATAC
1 TTATGGCATCCTTTCATGCCTTT-TATAC
87080 CATTTATACA
Statistics
Matches: 109, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
45 104 0.95
46 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.46
Consensus pattern (45 bp):
TTATGGCATCCTTTCATGCCTTTTATACACTATTATACATTTCAT
Found at i:87089 original size:90 final size:90
Alignment explanation
Indices: 86728--87079 Score: 264
Period size: 90 Copynumber: 3.9 Consensus size: 90
86718 CACCCATATG
* * * * * * * *
86728 CATTTCAATTATGGCAACCTTTCATTCTGATAATACACCCA-TATGCATTTCAATTATAGCATCC
1 CATTTCATTTATGGCATCCTTTCATACAGATAATACA-CTATTATACATTTCATTTATGGCATCC
** * * * *
86792 TTTCATGCCGATAATGCACCCA-TATG
65 TTTCATGCCTTTTATACA-CTATTATA
* * * * * * * *
86818 CTTTTCAATTATGGCATCCTTTCATGTC-GATAATGCACCCA-TATGCATTTTAATTATGGCATC
1 CATTTCATTTATGGCATCCTTTCAT-ACAGATAATACA-CTATTATACATTTCATTTATGGCATC
** * * * * *
86881 CTTTCATGCCGATAATGCAACCA-AATG
64 CTTTCATGCCTTTTATAC-ACTATTATA
* * *
86908 CATTTTAATTATGGCATCCTTTCATGCAGATAATACACTATTATACATTTCATTTATGGCATCCT
1 CATTTCATTTATGGCATCCTTTCATACAGATAATACACTATTATACATTTCATTTATGGCATCCT
86973 TTCATGCCTTTTATACACTATTATA
66 TTCATGCCTTTTATACACTATTATA
*** * * **
86998 CATTTCATTTATGGCATCCTTTCATACCTTTTATACATTATTATATGTTTCATTTATGGCATCCT
1 CATTTCATTTATGGCATCCTTTCATACAGATAATACACTATTATACATTTCATTTATGGCATCCT
87063 TTCATGCCTTTATATAC
66 TTCATGCCTTT-TATAC
87080 CATTTATACA
Statistics
Matches: 225, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
89 6 0.03
90 211 0.94
91 8 0.04
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (90 bp):
CATTTCATTTATGGCATCCTTTCATACAGATAATACACTATTATACATTTCATTTATGGCATCCT
TTCATGCCTTTTATACACTATTATA
Found at i:87245 original size:81 final size:81
Alignment explanation
Indices: 87131--87541 Score: 561
Period size: 81 Copynumber: 5.1 Consensus size: 81
87121 TAGCCTTTCT
* * * *
87131 TCTAACTTGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACCCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
** *
87196 AATATTTAACCGCTCA
66 GGTATTTAACCGTTCA
* * ** * *
87212 TCTAACTAGCATAATTGACCCCTTTCTGCCAAATAAACAGCTAGGCCATTAATCGTTTACTCTAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
87277 GGTATTTAACCGTTCA
66 GGTATTTAACCGTTCA
* * * *
87293 TCTAATTGGCATAATTAACACTTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
* *
87358 GATATTTAATCGTTCA
66 GGTATTTAACCGTTCA
* * * **
87374 TCTAACTGGCATAATTGACACCTTTCTTCCAAATGCACATCTAGACTGTTAATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
*
87439 GGTTTTTAACCGTTCA
66 GGTATTTAACCGTTCA
* * * *
87455 TCTAACTGGCATAATTAACATCTTTCTACCAAATGCATAGCTAGGCCATTAATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
87520 GGTATTTAACCGTTCA
66 GGTATTTAACCGTTCA
87536 TCTAAC
1 TCTAAC
87542 ACATTTAACA
Statistics
Matches: 285, Mismatches: 45, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 285 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (81 bp):
TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAC
GGTATTTAACCGTTCA
Found at i:89888 original size:2 final size:2
Alignment explanation
Indices: 89881--89911 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
89871 CCATAAAATT
89881 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
89912 CTGACAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92004 original size:45 final size:45
Alignment explanation
Indices: 91767--92096 Score: 306
Period size: 45 Copynumber: 7.3 Consensus size: 45
91757 CATTGAGAGA
* ** *
91767 ATCCATTCATGCTTATAATGCACCATTATGCATTTTTATTTATGGC
1 ATCCTTTCATGCCGATAATGCACCATTATGCA-TTTCATTTATGGC
** *
91813 ATCCTTTCATATCGATAATGCACCCA-TATGCATTTCAATTATGGC
1 ATCCTTTCATGCCGATAATGCA-CCATTATGCATTTCATTTATGGC
* ** * * *
91858 ATACTTTCATGTTGATAATGCACCCA-TACGCATTTCAATTATGGA
1 ATCCTTTCATGCCGATAATGCA-CCATTATGCATTTCATTTATGGC
* *
91903 ATCCTTTCATGTCGATAATGCACCCA-TATGCATTTCAATTATGGC
1 ATCCTTTCATGCCGATAATGCA-CCATTATGCATTTCATTTATGGC
* *
91948 ATCCTTTCATGCCGATAATGCACTATTATACATTTCATTTATGGC
1 ATCCTTTCATGCCGATAATGCACCATTATGCATTTCATTTATGGC
** * * * *
91993 ATCCTTTCATGCCTTTTATACACTATTATACATTTTCATTTATGGC
1 ATCCTTTCATGCCGATAATGCACCATTATGCA-TTTCATTTATGGC
** ** * * ***
92039 ATATTTTCATGCCTTTAATACACTATTATATGTTTCATTTATGGC
1 ATCCTTTCATGCCGATAATGCACCATTATGCATTTCATTTATGGC
92084 ATCCTTTCATGCC
1 ATCCTTTCATGCC
92097 TTTATATATC
Statistics
Matches: 250, Mismatches: 31, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
44 2 0.01
45 182 0.73
46 63 0.25
47 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (45 bp):
ATCCTTTCATGCCGATAATGCACCATTATGCATTTCATTTATGGC
Found at i:92286 original size:81 final size:81
Alignment explanation
Indices: 92139--92633 Score: 686
Period size: 81 Copynumber: 6.1 Consensus size: 81
92129 ATTCCTTTAT
* * * * * * * * *
92139 TCTTTTACCCAAAGGCATTTAGCCTTTCATCTAACTTGCATAATTGACACTTTTCTGTCAAGTGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
92204 ACAGTTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* * * * *
92220 TCCTTTACTCAACGATATTTAACCGTTAATCTAACTGGCATAATTGATACATTTCTGCCAATTGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
92285 ACAGCTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* * **
92301 TCTTTTACTCAACGGTATTTAACCGTTCATCTAAATGGCATAATTGACACTTTTCTTTCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
92366 ACAGTTAGGCAATTAA
66 ACAGCTAGGCAATTAA
* *
92382 TCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
92447 ACAGCTAGGCCATTAA
66 ACAGCTAGGCAATTAA
* * *
92463 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
92528 TA-AGCTAGGCCATTAA
66 -ACAGCTAGGCAATTAA
* * *
92544 TCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGCCATAATTGACATATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
92609 ACAGCTAGGCCATTAA
66 ACAGCTAGGCAATTAA
*
92625 TCTTCTACT
1 TCTTTTACT
92634 TTTGGAATTG
Statistics
Matches: 368, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
80 1 0.00
81 366 0.99
82 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
ACAGCTAGGCAATTAA
Found at i:92406 original size:162 final size:162
Alignment explanation
Indices: 92139--92633 Score: 767
Period size: 162 Copynumber: 3.1 Consensus size: 162
92129 ATTCCTTTAT
* * * * * * *
92139 TCTTTTACCCAAAGGCATTTAGCCTTTCATCTAACTTGCATAATTGACACTTTTCTGTCAAGTGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACTTTTCTGTCAAATGC
* *
92204 ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTAATCTAACTGGCATAATTGATA
66 ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACA
* *
92269 CATTTCTGCCAATTGCACAGCTAGGCAATTAA
131 CATTTCTGCCAAATGCACAGCTAGGCCATTAA
* * *
92301 TCTTTTACTCAACGGTATTTAACCGTTCATCTAAATGGCATAATTGACACTTTTCTTTCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACTTTTCTGTCAAATGC
92366 ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACA
66 ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACA
92431 CATTTCTGCCAAATGCACAGCTAGGCCATTAA
131 CATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
92463 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACTTTTCTGTCAAATGC
* * * * * *
92528 TA-AGCTAGGCCATTAATCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGCCATAATTGAC
66 -ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGAC
*
92592 ATATTTCTGCCAAATGCACAGCTAGGCCATTAA
130 ACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
92625 TCTTCTACT
1 TCTTTTACT
92634 TTTGGAATTG
Statistics
Matches: 307, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
162 306 1.00
163 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (162 bp):
TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTAGCATAATTGACACTTTTCTGTCAAATGC
ACAGTTAGGCAATTAATCCTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACA
CATTTCTGCCAAATGCACAGCTAGGCCATTAA
Done.