genome.fa.s7021.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007021.1 Hibiscus syriacus cultivar Beakdansim tig00018136_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207656

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694--959	90	2.9	91	89	1	381	38	16	20	24	1.93
2419--2492	38	2.0	37	81	7	87	24	0	8	67	1.17
24872--24922	22	2.3	22	89	0	75	35	1	31	31	1.69
27893--27920	2	14.0	2	100	0	56	50	0	0	50	1.00
30077--30145	14	4.8	14	76	11	68	72	0	4	23	1.02
30170--30454	37	7.7	37	84	7	334	44	6	2	46	1.41
30173--30429	75	3.5	74	89	7	348	43	7	2	47	1.44
35522--35580	17	3.4	17	72	21	59	62	6	13	16	1.51
35512--35580	35	2.0	35	91	0	111	57	8	15	17	1.62
37594--37753	62	2.5	62	81	6	180	31	15	23	29	1.95
37659--37802	64	2.2	65	82	10	163	30	16	22	29	1.96
38148--38180	16	2.1	16	100	0	66	18	42	0	39	1.50
38871--38914	21	2.1	21	82	0	52	31	15	43	9	1.79
43568--43746	64	2.8	63	80	8	200	29	17	24	28	1.97
44142--44174	16	2.1	16	100	0	66	18	42	0	39	1.50
44865--44908	21	2.1	21	82	0	52	31	15	43	9	1.79
49562--49740	64	2.8	63	80	8	200	29	17	24	28	1.97
50864--50907	21	2.1	21	82	0	52	31	15	43	9	1.79
56297--56336	21	1.9	21	89	0	62	30	7	7	55	1.56
58262--58440	64	2.8	63	81	9	202	29	17	24	29	1.97
58282--58468	64	2.9	64	82	3	180	31	16	22	29	1.96
66995--67071	40	1.9	40	83	0	100	29	18	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67170--67221	27	1.9	27	92	0	86	30	17	25	26	1.97
67197--67287	32	2.8	32	88	3	128	32	14	25	27	1.94
71153--71249	50	1.9	50	85	4	133	16	22	25	35	1.95
78092--78149	24	2.3	24	82	5	62	63	1	3	31	1.21
78230--78269	16	2.6	15	88	7	62	70	2	2	25	1.13
79114--79179	30	2.2	30	86	0	87	33	22	31	12	1.91
86798--86877	41	2.0	41	92	0	133	20	13	13	52	1.74
86797--86886	41	2.2	42	86	8	130	18	12	16	52	1.75
87210--88065	182	4.7	181	89	2	1248	41	14	16	27	1.88
90908--90966	24	2.4	24	77	2	64	35	1	13	49	1.52
92303--93666	199	6.8	197	86	3	1657	37	13	16	32	1.87
95267--95315	19	2.6	19	83	0	71	34	4	8	53	1.50
97701--97739	20	2.0	19	85	5	51	48	7	15	28	1.72
97651--98372	199	3.6	198	80	6	761	39	13	15	31	1.86
98370--98532	87	1.9	87	97	0	308	33	14	11	41	1.82
98446--98504	23	2.6	23	86	0	82	35	16	6	40	1.76
101653--101698	18	2.6	18	89	0	74	8	39	0	52	1.33
103949--103983	16	2.2	16	89	0	52	48	20	2	28	1.63
116636--116697	3	20.7	3	93	6	108	67	0	1	30	1.00
119245--119284	21	1.9	21	89	0	62	55	7	7	30	1.56
121785--122123	169	2.0	170	99	0	671	35	10	16	38	1.82
123230--123290	23	2.7	23	80	9	72	22	31	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123231--123310	21	3.7	21	71	17	56	25	31	23	20	1.98
134973--135002	5	6.2	5	96	3	53	0	20	0	80	0.72
134992--135056	27	2.4	28	82	12	89	9	15	12	63	1.52
141702--141754	3	17.3	3	83	11	63	35	1	0	62	1.06
142063--142089	14	1.9	14	100	0	54	22	7	48	22	1.75
143828--144163	131	2.6	130	82	3	399	32	10	16	40	1.82
146032--146065	17	2.1	16	88	5	50	14	8	0	76	1.01
152320--152365	21	2.2	21	84	0	56	10	17	2	69	1.27
156207--156240	17	2.1	16	88	5	50	14	8	0	76	1.01
164525--165203	134	5.1	133	81	5	703	30	22	16	30	1.95
164525--165203	133	5.1	131	82	4	727	30	22	16	30	1.95
164525--165230	267	2.6	266	82	5	836	31	21	16	30	1.95
167509--167875	130	2.8	131	80	2	398	30	10	17	41	1.83
169032--169185	77	2.0	77	85	2	211	44	8	9	38	1.67
170675--170834	71	2.2	72	83	4	207	28	9	24	38	1.86
172464--172513	26	1.9	26	83	0	64	34	10	10	46	1.71
174855--174896	22	1.9	22	85	0	57	50	11	26	11	1.74
178409--178486	2	39.0	2	100	0	156	50	0	0	50	1.00
180001--180035	17	2.1	18	89	10	56	48	2	28	20	1.63
180886--182063	36	32.4	34	77	13	687	36	22	19	20	1.95
180867--182063	72	16.5	71	76	9	880	36	22	19	20	1.95
180886--182063	108	10.8	108	77	9	942	36	22	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180863--182063	545	2.2	545	97	0	2260	36	22	19	20	1.95
182104--182289	38	4.9	36	72	11	140	34	23	18	23	1.96
181986--182292	115	2.7	114	89	3	445	33	23	19	23	1.97
201441--201495	21	2.7	21	94	2	94	45	12	5	36	1.66
201836--201861	11	2.4	11	100	0	52	42	7	0	50	1.31
202117--202168	3	17.3	3	100	0	104	32	0	0	67	0.91
202621--202649	3	10.0	3	92	7	51	68	0	31	0	0.89
204207--204523	131	2.4	129	85	1	420	32	10	15	42	1.80
204165--204523	128	2.8	131	82	3	458	32	10	14	42	1.79

Tables:   1

The End!