Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007022.1 Hibiscus syriacus cultivar Beakdansim tig00018158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92957
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:4728 original size:49 final size:49
Alignment explanation
Indices: 4675--4773 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
4665 TGATAGTCAA
4675 CAAGAATCTTTAAGAACATAGTTTGGTTTAAGGCAACATTGAACTATGT
1 CAAGAATCTTTAAGAACATAGTTTGGTTTAAGGCAACATTGAACTATGT
4724 CAAGAATCTTTAAGAACATAGTTTGGTTTAAGGCAACATTGAACTATGT
1 CAAGAATCTTTAAGAACATAGTTTGGTTTAAGGCAACATTGAACTATGT
4773 C
1 C
4774 CTTAGGGGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (49 bp):
CAAGAATCTTTAAGAACATAGTTTGGTTTAAGGCAACATTGAACTATGT
Found at i:7749 original size:15 final size:15
Alignment explanation
Indices: 7729--7774 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
7719 GGTTCTTGTA
7729 GTTGTTGTTGTAGCT
1 GTTGTTGTTGTAGCT
*
7744 GTTGTTGTTGCAG-T
1 GTTGTTGTTGTAGCT
*
7758 AGTTGTTGTTGTTGCT
1 -GTTGTTGTTGTAGCT
7774 G
1 G
7775 CTGCTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.92
16 1 0.04
ACGTcount: A:0.07, C:0.07, G:0.35, T:0.52
Consensus pattern (15 bp):
GTTGTTGTTGTAGCT
Found at i:7752 original size:18 final size:18
Alignment explanation
Indices: 7738--7772 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7728 AGTTGTTGTT
7738 GTAGCTGTTGTTGTTGCA
1 GTAGCTGTTGTTGTTGCA
*
7756 GTAGTTGTTGTTGTTGC
1 GTAGCTGTTGTTGTTGC
7773 TGCTGCTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.09, G:0.34, T:0.49
Consensus pattern (18 bp):
GTAGCTGTTGTTGTTGCA
Found at i:10354 original size:27 final size:27
Alignment explanation
Indices: 10313--10381 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
10303 TTGAGACTGT
10313 TGCTGCTGCTGCTGGCTTTGTTGTTGC
1 TGCTGCTGCTGCTGGCTTTGTTGTTGC
* *
10340 TGTTGCTGCTGCTGGCTTTGTTGTTGT
1 TGCTGCTGCTGCTGGCTTTGTTGTTGC
10367 TGCTGCTGCTGCTGG
1 TGCTGCTGCTGCTGG
10382 AGTTGGTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.00, C:0.20, G:0.35, T:0.45
Consensus pattern (27 bp):
TGCTGCTGCTGCTGGCTTTGTTGTTGC
Found at i:10386 original size:24 final size:24
Alignment explanation
Indices: 10310--10386 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 24
10300 GTATTGAGAC
**
10310 TGTTGCTGCTGCTGCTGGCTTTGT
1 TGTTGCTGCTGCTGCTGGAGTTGT
*
10334 TGTTGCTGTTGCTGCTGCTGGCTTTGTTGT
1 TGTTGC---TGCTGCTGCTGG---AGTTGT
10364 TGTTGCTGCTGCTGCTGGAGTTG
1 TGTTGCTGCTGCTGCTGGAGTTG
10387 GTTCATACGT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
24 10 0.23
27 24 0.55
30 10 0.23
ACGTcount: A:0.01, C:0.18, G:0.35, T:0.45
Consensus pattern (24 bp):
TGTTGCTGCTGCTGCTGGAGTTGT
Found at i:10881 original size:2 final size:2
Alignment explanation
Indices: 10874--10912 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10864 AAGAAAACGG
10874 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10913 TTTAAAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11198 original size:2 final size:2
Alignment explanation
Indices: 11191--11245 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
11181 CTATTGCGTT
11191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11233 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
11246 TGAAAATCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11509 original size:8 final size:8
Alignment explanation
Indices: 11496--11520 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11486 ACGAAACCGA
11496 AAAAATCG
1 AAAAATCG
11504 AAAAATCG
1 AAAAATCG
11512 AAAAATCG
1 AAAAATCG
11520 A
1 A
11521 CATGAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAAATCG
Found at i:14308 original size:20 final size:20
Alignment explanation
Indices: 14283--14349 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
14273 TTTTCCCAAT
14283 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
14303 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
14323 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
14344 TCGCAA
1 TCGCAA
14350 CACGAATTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:14325 original size:41 final size:41
Alignment explanation
Indices: 14280--14375 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
14270 CGATTTTCCC
*
14280 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGA
14321 AATTCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGA
*
14362 AAATCGCAATGCGA
1 AATTCGCAATGCGA
14376 TACTGACTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGA
Found at i:14329 original size:21 final size:20
Alignment explanation
Indices: 14283--14375 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
14273 TTTTCCCAAT
*
14283 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
14303 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
14323 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
** **
14344 TCGCAACACGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
14365 TCGCAATGCGA
1 TCGCAATGCGA
14376 TACTGACTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 28 0.50
21 28 0.50
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:14389 original size:20 final size:20
Alignment explanation
Indices: 14364--14457 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
14354 AATTGGGAAA
*
14364 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
14384 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
14405 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
14425 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
14445 TTCGCAACGCGAT
1 ATCGCAACGCGAT
14458 TTACTTAGCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:14406 original size:41 final size:41
Alignment explanation
Indices: 14361--14438 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
14351 ACGAATTGGG
* * *
14361 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
* *
14402 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATA
14439 CTGACTTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
Found at i:15043 original size:19 final size:19
Alignment explanation
Indices: 15021--15243 Score: 214
Period size: 19 Copynumber: 12.1 Consensus size: 19
15011 GAAACCAAAA
*
15021 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
15040 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
15059 TCGCATTGTGATTTTCATT
1 TCGCGTTGCGATTTTCATT
15078 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
15097 TCGCGTTGTGATTTTAATT
1 TCGCGTTGCGATTTTCATT
15116 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
15136 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
15152 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
15169 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
15183 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
15202 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
15222 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
15242 TC
1 TC
15244 AACCAAAAGA
Statistics
Matches: 172, Mismatches: 19, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
14 20 0.12
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 95 0.55
20 48 0.28
21 1 0.01
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:15168 original size:33 final size:33
Alignment explanation
Indices: 15131--15218 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
15121 GTTGCGATTT
* *
15131 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
15164 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
15197 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
15219 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:15220 original size:20 final size:20
Alignment explanation
Indices: 15186--15243 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
15176 GCGATTCTCT
**
15186 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
15206 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
15226 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
15244 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:17320 original size:21 final size:21
Alignment explanation
Indices: 17296--17362 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
17286 TCATTCCTCG
17296 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
17317 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
17338 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
17359 AGAG
1 AGAG
17363 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:17320 original size:42 final size:42
Alignment explanation
Indices: 17240--17362 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
17230 GCCCGACTCG
* * * * * *
17240 CCTATCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
*
17282 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
* * * *
17324 ACTGTCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 CCTATCATTCCTCG-AGA-GTCCCCTCCCACCATTCAAGAG
17363 CCCGATTCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
Found at i:18135 original size:12 final size:12
Alignment explanation
Indices: 18118--18142 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18108 TCTTCGGGGA
18118 CTTTTTCTTCTT
1 CTTTTTCTTCTT
18130 CTTTTTCTTCTT
1 CTTTTTCTTCTT
18142 C
1 C
18143 AAGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:19639 original size:14 final size:14
Alignment explanation
Indices: 19620--19656 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
19610 CATCAATTAA
19620 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
19634 ACAAATCATCTTTT
1 ACAAATCAACATTT
19648 ACAAATCAA
1 ACAAATCAA
19657 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:20223 original size:14 final size:14
Alignment explanation
Indices: 20204--20240 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
20194 CATCAATTAA
20204 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
20218 ACAAATCATCTTTT
1 ACAAATCAACATTT
20232 ACAAATCAA
1 ACAAATCAA
20241 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:20810 original size:14 final size:14
Alignment explanation
Indices: 20791--20827 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
20781 CATCAATTAA
20791 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
20805 ACAAATCATCTTTT
1 ACAAATCAACATTT
20819 ACAAATCAA
1 ACAAATCAA
20828 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:21398 original size:14 final size:14
Alignment explanation
Indices: 21379--21415 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
21369 CATCAATTAA
21379 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
21393 ACAAATCATCTTTT
1 ACAAATCAACATTT
21407 ACAAATCAA
1 ACAAATCAA
21416 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:21473 original size:587 final size:589
Alignment explanation
Indices: 19244--24025 Score: 9068
Period size: 588 Copynumber: 8.1 Consensus size: 589
19234 TTTAACAATT
*
19244 ATTATTGAATTCTAGGTACTTAACCAAATATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
*
19309 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATGAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
19374 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
19439 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
*
19504 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCATTCAACATAAAGCAGATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
19569 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
19634 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTA-TTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
19698 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
*
19763 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAATA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
19828 GCAA
586 GCAA
19832 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
19897 CTTGCATTATGTGTATTTTA--TGTGCACTTTTAACA-TTTCAGTTAGGCATGTATTAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
19959 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
20024 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
20089 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTG-TTTGCCTTCAACATAAAGCAGATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
20153 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
20218 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
20283 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
20348 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
20413 GCAA
586 GCAA
20417 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAG--TATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
20480 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
20545 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
*
20610 AATGAGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
*
20675 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAGA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
20740 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
20805 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
20870 ATTATTGAATCAAGAATCAACAACTTTGTGA-CCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
*
20934 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCATACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
*
20999 ACAA
586 GCAA
21003 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
* *
21068 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGACATGTATTAGTAATTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
21133 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
21198 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
*
21263 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCATATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
21328 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
21393 ACAAATCATCTTTTACAAATCAATTAAACAATC-AAAAATAATAATAATTCTTATTTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
21457 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
21522 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
21587 GCAA
586 GCAA
21591 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
21656 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
21721 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
21786 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATG-AAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
21850 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
21915 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
21980 AC-AATCATCTTTTACAAATCAATTAAACAATC---AAA-AATAATAATTCTTATTTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
22040 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
22105 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
*
22170 TCAA
586 GCAA
22174 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
22239 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
* *
22304 GAGTGTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTCACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
22369 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGA-----
22434 TCGTTGCGATAGCCATTTCGCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCA
256 T--TT----T---C---T--CGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCA
22499 ACATAAAGCAGATTGAAAATCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCA
307 ACATAAAGCAGATTGAAAATCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCA
22564 ATTAAACAAATCAACATTTACAAATCATC-TTTACAAATCAATTAAACAATCAAAAAATAATAAT
372 ATTAAACAAATCAACATTTACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAAT
22628 AATTCTTATTTCTTCATCAATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATT
437 AATTCTTATTTCTTCATCAATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATT
22693 TCACGCAGCTCACTTAAGGATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACA
502 TCACGCAGCTCACTTAAGGATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACA
22758 CATCTAAAACCTACAAACAGCAA
567 CATCTAAAACCTACAAACAGCAA
22781 ATTATTGAATTCTAGGTACTTAACCAAACA-TTTCAAACCAAAAGGAG--TATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
*
22843 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAATTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
22908 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
22973 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
23038 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
23103 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
23168 ACAAATCATCTTTTACAAATCAATTAAACAATC-AAAAATAATAATAATTCTTATTTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
23232 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
23297 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
23362 GCAA
586 GCAA
23366 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
23431 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
66 CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
23496 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
131 GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
23561 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
196 AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
*
23626 TCGTTGTGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
261 TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
23691 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
326 TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
23756 ACAAATCATCTTTTACAAATCAATTAAACAATC-AAAAATAATAATAATTCTTA-TTCTTCATCA
391 ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
*
23819 ATTATTGAATTAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
456 ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
23884 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
521 ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
*
23949 ACAA
586 GCAA
23953 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
1 ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
*
24018 CTGGCATT
66 CTTGCATT
24026 TGACTTACCA
Statistics
Matches: 4127, Mismatches: 30, Indels: 75
0.98 0.01 0.02
Matches are distributed among these distances:
583 431 0.10
584 164 0.04
585 731 0.18
586 423 0.10
587 616 0.15
588 1181 0.29
589 1 0.00
590 1 0.00
591 2 0.00
593 1 0.00
595 1 0.00
597 2 0.00
598 1 0.00
599 1 0.00
601 1 0.00
603 153 0.04
604 209 0.05
606 20 0.00
607 188 0.05
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (589 bp):
ATTATTGAATTCTAGGTACTTAACCAAACATTTTCAAACCAAAAGGAGTATATATGTTAACAAAA
CTTGCATTATGTGTATTTTATGTGTGCACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTT
GAGTTTGAACATTGCTATGATCTGTTCAGTTGTCATCACTTATTAGACATTCATTTGACTATCGC
AATGCGAAAATGGTTATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCATTGCGATTTTC
TCGTTGCGATAGCCATTTCGCGTTGCGATAGTCTGTTTTGCCTTCAACATAAAGCAGATTGAAAA
TCAACAAATCAACTATTACATTTCAACACAAATTATGTACACATCAATTAAACAAATCAACATTT
ACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAATAATAATTCTTATTTCTTCATCA
ATTATTGAATCAAGAATCAACAACTTTGTGACCCCGTACATCCATTTCACGCAGCTCACTTAAGG
ATTAACCTGCAGAAACCAAACATTTGCTCAAACAAGACTTCCTACACATCTAAAACCTACAAACA
GCAA
Found at i:22457 original size:19 final size:19
Alignment explanation
Indices: 22430--22483 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
22420 GCATTGCGAT
*
22430 TTTCTCGTTGCGATAGCCA
1 TTTCGCGTTGCGATAGCCA
22449 TTTCGCGTTGCGATAGCCA
1 TTTCGCGTTGCGATAGCCA
22468 TTTCGCGTTGCGATAG
1 TTTCGCGTTGCGATAG
22484 TCTGTTTTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.15, C:0.24, G:0.26, T:0.35
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGCCA
Found at i:22588 original size:14 final size:13
Alignment explanation
Indices: 22569--22604 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
22559 CATCAATTAA
22569 ACAAATCAACATTT
1 ACAAATCAAC-TTT
*
22583 ACAAATCATCTTT
1 ACAAATCAACTTT
22596 ACAAATCAA
1 ACAAATCAA
22605 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (13 bp):
ACAAATCAACTTT
Found at i:23173 original size:14 final size:14
Alignment explanation
Indices: 23154--23190 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
23144 CATCAATTAA
23154 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
23168 ACAAATCATCTTTT
1 ACAAATCAACATTT
23182 ACAAATCAA
1 ACAAATCAA
23191 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:23761 original size:14 final size:14
Alignment explanation
Indices: 23742--23778 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
23732 CATCAATTAA
23742 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
23756 ACAAATCATCTTTT
1 ACAAATCAACATTT
23770 ACAAATCAA
1 ACAAATCAA
23779 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:25665 original size:19 final size:19
Alignment explanation
Indices: 25641--25712 Score: 99
Period size: 19 Copynumber: 3.7 Consensus size: 19
25631 GAAACTTAAA
25641 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
25660 ATCGCAACGCAGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
25680 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
25699 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
25713 CAAAAATCGC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 29 0.63
20 17 0.37
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:25729 original size:19 final size:19
Alignment explanation
Indices: 25680--25729 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
25670 AGAAATGGCT
**
25680 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAACAAAA
*
25699 ATCGCAACGCGAAACAAAA
1 ATCGCAATGCGAAACAAAA
*
25718 ATCGCATTGCGA
1 ATCGCAATGCGA
25730 TTTTGTCGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAACAAAA
Found at i:25743 original size:14 final size:14
Alignment explanation
Indices: 25724--25779 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
25714 AAAAATCGCA
25724 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
*
25738 TTGCGATTTCATTTCGCG
1 TTGCGATTT--TGT--CG
25756 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
25770 TTGCGATTTT
1 TTGCGATTTT
25780 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 21 0.58
16 4 0.11
18 11 0.31
ACGTcount: A:0.09, C:0.16, G:0.25, T:0.50
Consensus pattern (14 bp):
TTGCGATTTTGTCG
Found at i:25765 original size:32 final size:33
Alignment explanation
Indices: 25719--25795 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 33
25709 GAAACAAAAA
25719 TCGCATTGCGATTTTGTCGTTGCGA-TTTCATT
1 TCGCATTGCGATTTTGTCGTTGCGATTTTCATT
*
25751 TCGCGTTGCGATTTTGTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTGTCGTTGCGATTTTCATT
25784 TCGCATTGCGAT
1 TCGCATTGCGAT
25796 AGCCATTTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 24 0.57
33 18 0.43
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.45
Consensus pattern (33 bp):
TCGCATTGCGATTTTGTCGTTGCGATTTTCATT
Found at i:25794 original size:19 final size:17
Alignment explanation
Indices: 25738--25795 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
25728 GATTTTGTCG
25738 TTGCGATTTCATTTCGC
1 TTGCGATTTCATTTCGC
*
25755 GTTGCGATTT--TGTCG-
1 -TTGCGATTTCATTTCGC
25770 TTGCGATTTTCATTTCGC
1 TTGCGA-TTTCATTTCGC
25788 ATTGCGAT
1 -TTGCGAT
25796 AGCCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
15 3 0.09
16 4 0.12
17 4 0.12
18 10 0.30
19 6 0.18
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (17 bp):
TTGCGATTTCATTTCGC
Found at i:25814 original size:20 final size:19
Alignment explanation
Indices: 25780--25834 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
25770 TTGCGATTTT
*
25780 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
25799 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
25819 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
25835 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:26333 original size:18 final size:18
Alignment explanation
Indices: 26307--26351 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
26297 GTCGATCAGA
*
26307 TGATGGCTCTAGGTGAGG
1 TGATGGCTCTAGGCGAGG
* *
26325 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTAGGCGAGG
26343 TGATGGCTC
1 TGATGGCTC
26352 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.42, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTAGGCGAGG
Found at i:27692 original size:20 final size:20
Alignment explanation
Indices: 27667--27720 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
27657 AATAGTTTCT
27667 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
** *
27687 GAAAATGACTATCGCAACGC
1 GAAAATGAAAATCGCAACAC
*
27707 GAAACT-AAAATCGC
1 GAAAATGAAAATCGC
27721 GTTGCGATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:27979 original size:22 final size:22
Alignment explanation
Indices: 27954--27997 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
27944 GATTTAGATA
27954 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
27976 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
27998 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:28210 original size:20 final size:20
Alignment explanation
Indices: 28185--28278 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
28175 GATTATGTAT
28185 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
28205 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
28225 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
28246 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
28266 TATCGCATTGCGA
1 TATCGCGTTGCGA
28279 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:28279 original size:20 final size:20
Alignment explanation
Indices: 28165--28279 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
28155 CGCTTTGAAA
*
28165 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
28186 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
28206 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
28226 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
28247 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
28267 ATCGCATTGCGAT
1 ATCGCATTGCGAT
28280 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:28298 original size:41 final size:41
Alignment explanation
Indices: 28207--28341 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
28197 AAAGTCAGTA
* * * ** *
28207 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
28247 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
28289 TCGCGTTGCGAT-TTACTTATTCGCATTGCGAATTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
28330 TCGCGTTGCGAT
1 TCGCGTTGCGAT
28342 TTACTTATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 73 0.94
42 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:28312 original size:20 final size:20
Alignment explanation
Indices: 28268--28360 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
28258 ATAGTCAGTA
* **
28268 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
28289 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
28309 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
28330 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
28350 TCGCATTGCGA
1 TCGCATTGCGA
28361 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:28342 original size:41 final size:41
Alignment explanation
Indices: 28268--28363 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
28258 ATAGTCAGTA
*
28268 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
28309 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
28350 TCGCATTGCGAATT
1 TCGCATTGCGAATT
28364 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:28903 original size:12 final size:12
Alignment explanation
Indices: 28886--28936 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
28876 TTCAAAGAGG
28886 TTTTATATTTAA
1 TTTTATATTTAA
28898 TTTTATA-TTATA
1 TTTTATATTTA-A
*
28910 TTTGAT-TTTAA
1 TTTTATATTTAA
28921 TTTTA-ATATTAA
1 TTTTATAT-TTAA
28933 TTTT
1 TTTT
28937 TTAAATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:28985 original size:27 final size:25
Alignment explanation
Indices: 28925--28995 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
28915 TTTTAATTTT
28925 AATATTAATTTTTTAA-A-TAAATTA
1 AATATTAA-TTTTTAATATTAAATTA
*
28949 AATATTAATTTTTAATATTATATTA
1 AATATTAATTTTTAATATTAAATTA
28974 TAGATATTAA-TTTTAATATTAA
1 -A-ATATTAATTTTTAATATTAA
28996 TTTTTTAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.17
24 9 0.22
25 6 0.15
26 12 0.29
27 7 0.17
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
AATATTAATTTTTAATATTAAATTA
Found at i:28994 original size:12 final size:12
Alignment explanation
Indices: 28894--28999 Score: 85
Period size: 12 Copynumber: 8.7 Consensus size: 12
28884 GGTTTTATAT
28894 TTAATTTT-ATA
1 TTAATTTTAATA
* *
28905 TT-ATATTTGATT
1 TTAAT-TTTAATA
28917 TTAATTTTAATA
1 TTAATTTTAATA
28929 TTAATTTTTTAA-A
1 TTAA--TTTTAATA
* *
28942 -TAAATTAAATA
1 TTAATTTTAATA
28953 TTAATTTTTAATA
1 TTAA-TTTTAATA
*
28966 TTATATTATAGATA
1 TTA-ATTTTA-ATA
28980 TTAATTTTAATA
1 TTAATTTTAATA
28992 TTAATTTT
1 TTAATTTT
29000 TTAAATTTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
10 6 0.08
11 6 0.08
12 30 0.39
13 21 0.28
14 13 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
TTAATTTTAATA
Found at i:29011 original size:13 final size:14
Alignment explanation
Indices: 28921--29012 Score: 67
Period size: 13 Copynumber: 7.1 Consensus size: 14
28911 TTGATTTTAA
28921 TTTTAATATTAATT
1 TTTTAATATTAATT
28935 TTTTAA-A-TAA--
1 TTTTAATATTAATT
* *
28945 ATTAAATATTAA-T
1 TTTTAATATTAATT
*
28958 TTTTAATATT-ATA
1 TTTTAATATTAATT
*
28971 TTATAGATATTAA--
1 TTTTA-ATATTAATT
28984 TTTTAATATTAATT
1 TTTTAATATTAATT
*
28998 TTTTAA-ATTTATT
1 TTTTAATATTAATT
29011 TT
1 TT
29013 ATATCATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
10 4 0.06
11 1 0.02
12 14 0.23
13 25 0.40
14 17 0.27
15 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (14 bp):
TTTTAATATTAATT
Found at i:29044 original size:20 final size:20
Alignment explanation
Indices: 29000--29069 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 20
28990 TATTAATTTT
29000 TTAAATTTATTTTATATCA-TA
1 TTAAA-TTATTTTATAT-ATTA
29021 -TAAATTATTTTATATATTA
1 TTAAATTATTTTATATATTA
29040 TTAAA--ATTTTATAT-TTA
1 TTAAATTATTTTATATATTA
*
29057 TTTTAATTATTTT
1 -TTAAATTATTTT
29070 GATTTAAGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
17 3 0.07
18 14 0.33
19 13 0.30
20 13 0.30
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAATTATTTTATATATTA
Found at i:29046 original size:21 final size:21
Alignment explanation
Indices: 29000--29047 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
28990 TATTAATTTT
*
29000 TTAAATTTATTTTATATCATA
1 TTAAAATTATTTTATATCATA
29021 -T-AAATTATTTTATAT-ATTA
1 TTAAAATTATTTTATATCA-TA
29040 TTAAAATT
1 TTAAAATT
29048 TTATATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 2 0.09
21 5 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAAATTATTTTATATCATA
Found at i:31872 original size:47 final size:47
Alignment explanation
Indices: 31773--31910 Score: 204
Period size: 47 Copynumber: 2.9 Consensus size: 47
31763 TAGAAAAGAT
* * ** *
31773 ATAAATCAATGAATTGATAAAAAAATAATGAGACAAATTTATTTCTAC
1 ATAAATCAATGAATTGAT-AGAAGACGATAAGACAAATTTATTTCTAC
* *
31821 ATAAATCAATGAATTGATAGAAGACGATAAGACAAATTTTTTTTTAC
1 ATAAATCAATGAATTGATAGAAGACGATAAGACAAATTTATTTCTAC
31868 ATAAATCAATGAATTGATAGAAGACGATAAGACAAATTTATTT
1 ATAAATCAATGAATTGATAGAAGACGATAAGACAAATTTATTT
31911 GAAAAACCGT
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 64 0.78
48 18 0.22
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.32
Consensus pattern (47 bp):
ATAAATCAATGAATTGATAGAAGACGATAAGACAAATTTATTTCTAC
Found at i:41999 original size:37 final size:40
Alignment explanation
Indices: 41947--42024 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 40
41937 TATATAATTT
*
41947 TATTTTTTTGAATAGT-TTG-G-G-GATTATACAAGGTAGTA
1 TATTTTCTTGAATAGTATTGAGAGTGATTAT--AAGGTAGTA
41985 TATTTTCTT-AATAGTATTGAGAGTGATTATAAGGTAGTA
1 TATTTTCTTGAATAGTATTGAGAGTGATTATAAGGTAGTA
42024 T
1 T
42025 TTGACCTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
37 6 0.17
38 11 0.31
39 11 0.31
40 1 0.03
41 6 0.17
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.45
Consensus pattern (40 bp):
TATTTTCTTGAATAGTATTGAGAGTGATTATAAGGTAGTA
Found at i:44086 original size:10 final size:10
Alignment explanation
Indices: 44072--44123 Score: 77
Period size: 10 Copynumber: 5.2 Consensus size: 10
44062 TTTTTGGTAC
*
44072 ATTTTTTTTA
1 ATTTTTTTCA
* *
44082 TTTTTTTTTA
1 ATTTTTTTCA
44092 ATTTTTTTCA
1 ATTTTTTTCA
44102 ATTTTTTTCA
1 ATTTTTTTCA
44112 ATTTTTTTCA
1 ATTTTTTTCA
44122 AT
1 AT
44124 CGTTTAACTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
ATTTTTTTCA
Found at i:44095 original size:20 final size:20
Alignment explanation
Indices: 44052--44119 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
44042 TTATAACATG
* **
44052 TTTTCTTTATTTTTTGGTACA
1 TTTTTTTTATTTTTTTTTA-A
44073 TTTTTTTTATTTTTTTTTAA
1 TTTTTTTTATTTTTTTTTAA
* * *
44093 TTTTTTTCAATTTTTTTCAA
1 TTTTTTTTATTTTTTTTTAA
44113 TTTTTTT
1 TTTTTTT
44120 CAATCGTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 25 0.61
21 16 0.39
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTTTTTATTTTTTTTTAA
Found at i:60488 original size:30 final size:31
Alignment explanation
Indices: 60432--60489 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
60422 ATTGTAACCC
*
60432 TTTTTTACATTAGTAATCTTGTATTCAGTAT
1 TTTTTTACATTAGCAATCTTGTATTCAGTAT
*
60463 TTTTTTACAGTTTGCAA-CTTG-ATTCAG
1 TTTTTTACA-TTAGCAATCTTGTATTCAG
60490 CCGCATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 6 0.25
31 13 0.54
32 5 0.21
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (31 bp):
TTTTTTACATTAGCAATCTTGTATTCAGTAT
Found at i:63717 original size:39 final size:39
Alignment explanation
Indices: 63655--63743 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
63645 ATCACACGCT
* * * *
63655 CCTTTGTTTGTCGAAACATGAAGATTCGAATCTAAAAGC
1 CCTTTGTTTGTCGAAACAGGAAGACTCAAATCTAAAACC
63694 CCTTTGTTTGTC-ACAACAGGAAGACTCAAATCTAAAACC
1 CCTTTGTTTGTCGA-AACAGGAAGACTCAAATCTAAAACC
*
63733 CCCTTGTTTGT
1 CCTTTGTTTGT
63744 TACAGTATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.02
39 43 0.98
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (39 bp):
CCTTTGTTTGTCGAAACAGGAAGACTCAAATCTAAAACC
Found at i:70973 original size:12 final size:12
Alignment explanation
Indices: 70956--70981 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70946 TATCAAAGGA
70956 TTTAACTCTCTC
1 TTTAACTCTCTC
70968 TTTAACTCTCTC
1 TTTAACTCTCTC
70980 TT
1 TT
70982 CTTGTGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (12 bp):
TTTAACTCTCTC
Found at i:80453 original size:136 final size:136
Alignment explanation
Indices: 80209--80480 Score: 544
Period size: 136 Copynumber: 2.0 Consensus size: 136
80199 ATTTGTAACA
80209 CAAGATCAAGTGGATTGACTGAAGGAAGCATAATCATCAATAATAAATTAAATCACTGAAATTGT
1 CAAGATCAAGTGGATTGACTGAAGGAAGCATAATCATCAATAATAAATTAAATCACTGAAATTGT
80274 GAAGTACCATCTCAAACCAAATTAGAATGCGTACAGAATGCAGAATGATGAACCAAAATAACTTG
66 GAAGTACCATCTCAAACCAAATTAGAATGCGTACAGAATGCAGAATGATGAACCAAAATAACTTG
80339 CAAAGT
131 CAAAGT
80345 CAAGATCAAGTGGATTGACTGAAGGAAGCATAATCATCAATAATAAATTAAATCACTGAAATTGT
1 CAAGATCAAGTGGATTGACTGAAGGAAGCATAATCATCAATAATAAATTAAATCACTGAAATTGT
80410 GAAGTACCATCTCAAACCAAATTAGAATGCGTACAGAATGCAGAATGATGAACCAAAATAACTTG
66 GAAGTACCATCTCAAACCAAATTAGAATGCGTACAGAATGCAGAATGATGAACCAAAATAACTTG
80475 CAAAGT
131 CAAAGT
80481 TAACAAAGAT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (136 bp):
CAAGATCAAGTGGATTGACTGAAGGAAGCATAATCATCAATAATAAATTAAATCACTGAAATTGT
GAAGTACCATCTCAAACCAAATTAGAATGCGTACAGAATGCAGAATGATGAACCAAAATAACTTG
CAAAGT
Found at i:83954 original size:15 final size:15
Alignment explanation
Indices: 83931--83968 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
83921 CATTTAAACC
83931 CGACCCGATGGGTTT
1 CGACCCGATGGGTTT
*
83946 CGACTCGATGGGTTT
1 CGACCCGATGGGTTT
*
83961 CGATCCGA
1 CGACCCGA
83969 CTCGACCCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.16, C:0.26, G:0.32, T:0.26
Consensus pattern (15 bp):
CGACCCGATGGGTTT
Found at i:91283 original size:16 final size:16
Alignment explanation
Indices: 91262--91312 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
91252 TCCGCTCCGA
91262 TTATATATATAATATT
1 TTATATATATAATATT
* *
91278 TTATATATTTTATA-T
1 TTATATATATAATATT
*
91293 TAATTATATATAATATT
1 TTA-TATATATAATATT
91310 TTA
1 TTA
91313 GTTGATTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
15 3 0.11
16 21 0.78
17 3 0.11
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATATATAATATT
Done.