Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007024.1 Hibiscus syriacus cultivar Beakdansim tig00018170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89533

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3705--3761
3
18.7
3
96
3
105
66
0
1
31
1.02
3847--3888
15
2.7
16
81
7
59
11
14
28
45
1.80
7919--7965
19
2.5
19
82
6
51
12
23
31
31
1.92
7961--8019
27
2.2
27
87
0
82
22
47
18
11
1.81
14933--15001
9
7.3
9
73
9
57
14
27
27
30
1.95
14933--14977
19
2.4
19
88
0
63
13
22
28
35
1.92
14997--15043
22
2.2
21
96
3
85
19
46
23
10
1.80
19474--19510
11
3.7
10
89
10
58
13
21
27
37
1.91
19558--19593
17
2.1
17
89
0
54
19
41
22
16
1.90
22243--22281
17
2.4
16
82
4
51
53
5
0
41
1.23
35962--36083
62
2.0
62
96
0
226
33
18
14
32
1.92
40463--40799
68
5.0
68
82
6
454
27
12
12
46
1.78
42558--42624
29
2.3
29
92
0
116
23
19
26
29
1.98
43422--43462
12
3.4
12
89
0
55
31
51
7
9
1.62
43429--43462
6
5.7
6
96
0
50
32
52
8
5
1.56
47818--47856
16
2.5
16
87
4
53
35
5
23
35
1.77
54996--55077
43
1.9
43
92
0
137
41
15
9
32
1.80
56719--56777
20
3.0
19
80
11
66
50
1
1
45
1.21
57712--57778
33
2.0
33
94
0
116
16
23
17
41
1.89
61269--61325
27
2.1
27
93
0
96
43
15
1
38
1.57
62827--62868
2
21.0
2
95
0
75
0
52
0
47
1.00
62868--62900
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67220--67364
29
5.0
28
67
11
96
36
12
3
47
1.58
67211--67364
57
2.7
57
82
6
193
36
12
3
46
1.61
71428--71491
24
2.8
23
80
17
80
20
28
20
31
1.97
75526--75589
24
2.8
23
77
17
71
20
29
20
29
1.97
85224--85310
40
2.1
41
85
4
113
44
6
29
18
1.75

Tables:   1

The End!