genome.fa.s7026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007026.1 Hibiscus syriacus cultivar Beakdansim tig00018185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75003

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1637--1662	13	2.0	13	100	0	52	38	0	30	30	1.58
7168--7208	16	2.6	16	100	0	82	56	26	12	4	1.56
7526--7617	34	2.7	34	87	0	112	55	16	13	15	1.70
10590--10680	24	3.8	23	79	13	78	18	6	3	71	1.22
18435--18485	23	2.3	23	86	6	79	19	41	19	19	1.91
22363--22415	7	7.4	7	77	10	54	81	1	15	1	0.87
23549--23669	32	3.8	32	81	6	120	27	13	21	38	1.90
23556--23651	32	2.9	33	84	4	131	28	10	20	40	1.85
24336--24582	106	2.3	106	89	1	361	35	22	18	23	1.96
24730--24915	101	1.8	101	83	4	250	28	18	12	40	1.87
24909--24943	15	2.3	15	90	0	52	20	20	20	40	1.92
25088--25175	35	2.4	37	88	9	128	39	20	9	30	1.83
28370--28436	31	2.2	31	89	2	100	29	7	26	35	1.84
28663--28731	31	2.2	31	92	0	111	30	21	27	20	1.98
29655--29690	18	2.1	18	89	5	56	41	0	2	55	1.14
30467--30494	4	7.0	4	100	0	56	25	0	25	50	1.50
34804--34840	18	2.1	18	90	5	58	32	10	10	45	1.74
37650--37807	21	7.8	20	70	7	77	37	25	17	18	1.93
37775--37964	20	9.4	20	84	5	240	35	27	18	18	1.95
38347--38417	33	2.2	33	92	5	117	9	23	16	49	1.76
38497--38573	21	3.7	21	81	6	102	48	16	22	12	1.80
38558--38614	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38551--38630	33	2.4	33	95	0	142	47	22	21	8	1.78
38626--38739	19	6.1	19	77	13	103	12	23	18	45	1.83
38675--38739	21	3.1	21	80	4	87	12	24	15	47	1.79
40669--40725	14	3.7	14	72	20	51	43	24	22	8	1.81
40683--40774	19	5.4	18	72	24	65	46	28	17	7	1.75
40651--40774	33	3.7	33	91	1	185	45	27	17	8	1.78
40700--40758	14	3.9	14	76	20	64	47	28	16	6	1.72
40770--40961	19	10.6	19	77	11	179	10	20	23	45	1.82
40775--40943	33	4.8	33	78	11	176	10	20	23	46	1.81
42889--42924	14	2.6	14	95	0	63	33	0	22	44	1.53
43031--43148	19	6.6	19	79	19	139	44	17	23	13	1.85
43031--43148	53	2.2	52	95	3	209	44	17	23	13	1.85
43144--43361	53	4.1	53	86	10	297	13	21	17	46	1.83
43138--43347	72	2.9	73	86	6	270	14	21	17	46	1.84
43215--43361	33	4.2	33	81	13	188	13	21	18	46	1.83
43564--43644	20	4.1	20	90	0	117	22	18	28	30	1.97
44160--44345	20	9.3	20	87	4	232	20	18	26	34	1.96
44861--45089	20	11.4	20	82	1	208	19	17	25	37	1.93
43559--45046	701	2.1	701	98	0	2841	29	17	21	32	1.95
45057--45155	42	2.4	43	76	8	98	22	19	22	36	1.95
54936--54961	13	2.0	13	100	0	52	23	15	30	30	1.95
59243--59273	16	1.9	16	93	0	53	16	0	3	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60628--60672	21	2.1	21	87	0	63	31	28	24	15	1.96
62359--62571	103	2.1	103	94	0	372	27	13	22	36	1.92
62588--62655	23	3.0	23	91	0	100	20	27	26	25	1.99
67958--68007	24	2.1	24	85	7	66	28	2	12	58	1.45
74800--74841	19	2.2	20	87	12	61	14	16	0	69	1.20

Tables:   1

The End!