Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007028.1 Hibiscus syriacus cultivar Beakdansim tig00018196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78077

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1832--1882
25
2.0
26
92
3
86
56
3
27
11
1.52
4856--5152
83
3.6
83
84
1
355
30
22
17
28
1.97
4928--5154
41
5.5
41
71
11
140
29
22
18
29
1.97
9731--9760
16
1.9
15
93
6
51
50
3
0
46
1.18
13715--13753
20
2.0
20
85
10
53
41
2
0
56
1.13
14670--14746
31
2.5
31
80
2
91
27
31
27
14
1.95
25422--25480
23
2.7
23
82
10
70
23
25
28
22
1.99
25422--25502
21
3.8
21
80
9
83
20
23
29
25
1.99
32983--33020
20
1.9
20
88
0
58
26
34
26
13
1.93
43169--43198
7
4.1
7
95
4
51
73
13
0
13
1.10
44086--44120
17
2.1
17
100
0
70
11
25
45
17
1.81
48109--48152
23
2.0
22
86
13
63
27
4
4
63
1.33
49028--49125
31
3.2
31
77
7
110
48
5
3
42
1.40
49091--49252
76
2.1
78
91
3
265
37
6
7
49
1.56
50817--50849
15
2.1
16
88
5
50
27
12
24
36
1.91
54896--54943
19
2.5
19
93
0
78
20
27
25
27
1.99
58344--58383
20
2.0
21
85
5
55
22
17
10
50
1.76
59124--59381
129
2.0
128
94
2
455
28
20
16
34
1.94
63752--63794
18
2.4
19
88
7
63
18
9
4
67
1.36
67121--67183
23
2.7
23
100
0
126
20
25
33
20
1.97
71003--71042
21
1.9
21
85
10
55
35
10
2
52
1.48
71186--71224
15
2.6
15
100
0
78
17
33
12
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77279--77326
20
2.4
19
75
6
51
60
6
18
14
1.55

Tables:   1

The End!