Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007029.1 Hibiscus syriacus cultivar Beakdansim tig00018197_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139753

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36--83
20
2.5
20
86
3
71
35
20
20
22
1.96
13686--13923
119
2.0
119
99
0
467
32
11
22
33
1.90
15595--15628
15
2.3
15
100
0
68
5
47
11
35
1.65
21428--21473
15
3.1
15
81
6
58
41
0
0
58
0.98
21449--21547
42
2.4
41
82
12
123
45
1
1
52
1.14
21763--21930
20
8.2
20
76
14
139
44
20
18
16
1.87
21820--21920
40
2.5
42
86
6
161
40
22
19
16
1.91
22026--22070
6
7.5
6
100
0
90
33
51
15
0
1.44
22552--22594
6
7.5
6
97
2
72
0
16
53
30
1.43
22697--22833
20
6.8
20
85
11
190
16
20
27
35
1.94
22690--22895
20
10.2
20
78
8
152
15
20
24
39
1.91
28435--28467
16
2.1
16
100
0
66
48
12
21
18
1.80
30832--30877
20
2.3
20
96
0
83
23
23
8
43
1.82
35070--35144
39
1.9
39
94
0
132
16
33
17
33
1.92
41099--41234
60
2.2
60
82
6
168
36
13
8
41
1.75
42352--42384
17
2.0
16
94
5
57
27
12
12
48
1.76
48754--48804
18
2.9
17
80
11
59
43
3
0
52
1.19
53476--53542
30
2.4
28
74
13
75
43
1
2
52
1.25
54435--54465
15
2.0
16
93
6
55
58
6
3
32
1.40
60949--60988
21
1.9
21
100
0
80
25
30
32
12
1.92
61283--61403
58
2.1
59
92
1
199
47
7
9
36
1.64
61547--61622
12
5.9
12
72
14
53
44
7
1
46
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61621--61690
2
35.0
2
100
0
140
50
0
0
50
1.00
68106--68175
36
2.0
35
85
2
95
37
7
17
38
1.77
74968--75031
23
2.7
24
76
13
69
54
0
1
43
1.09
74974--75031
24
2.4
25
82
8
75
55
0
1
43
1.10
75632--75719
2
44.0
2
100
0
176
50
0
0
50
1.00
75799--75857
21
2.8
20
70
9
55
23
1
25
49
1.60
79876--79922
21
2.2
22
84
3
60
31
19
21
27
1.97
82435--82475
20
2.0
20
86
9
57
68
4
4
21
1.28
83310--83448
70
2.0
69
91
1
224
33
6
7
52
1.56
84665--84724
11
5.5
11
75
13
52
76
1
10
11
1.09
84678--84724
24
2.0
23
83
4
58
78
0
8
12
0.95
84735--84833
52
2.0
51
84
9
132
71
3
10
15
1.24
85086--85124
14
2.8
14
92
0
60
48
2
17
30
1.61
85799--85850
9
5.8
9
80
13
54
75
1
0
23
0.91
85799--85851
15
3.6
13
77
22
52
75
1
0
22
0.90
86035--86064
2
15.5
2
93
6
53
50
0
0
50
1.00
85858--86048
34
5.4
34
85
7
247
43
6
3
46
1.46
87277--87345
9
7.3
9
70
15
50
15
28
26
28
1.96
87297--87343
18
2.6
19
90
10
64
19
27
27
25
1.99
87305--87343
18
2.1
19
95
4
71
20
25
28
25
1.99
87357--87386
7
4.4
7
91
8
53
16
30
30
23
1.96
87357--87382
13
2.0
13
100
0
52
15
30
30
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89854--89900
25
2.0
25
87
8
71
29
0
6
63
1.19
94007--94089
33
2.5
34
86
3
107
45
1
2
50
1.22
94386--94449
30
2.1
32
88
5
96
31
9
9
50
1.66
95367--95489
39
3.1
39
88
3
149
27
19
17
34
1.95
95399--95489
39
2.3
39
96
0
164
28
20
17
32
1.96
104016--104184
65
2.6
65
91
0
275
30
15
7
46
1.72
105369--105395
5
5.4
5
100
0
54
40
18
0
40
1.51
110661--110686
5
5.2
5
100
0
52
38
61
0
0
0.96
112117--112150
18
1.9
17
94
5
59
29
29
17
23
1.97
113693--113812
62
2.0
59
82
8
143
38
11
16
33
1.85

Tables:   1

The End!