genome.fa.s703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000703.1 Hibiscus syriacus cultivar Beakdansim tig00001368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66237

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800--850	19	2.6	20	78	3	59	29	9	27	33	1.89
1001--1038	20	1.9	20	100	0	76	36	10	28	23	1.88
2022--2093	21	3.4	21	82	5	92	37	12	26	23	1.90
2033--2094	14	4.4	15	73	18	62	38	11	27	22	1.88
2222--2271	21	2.4	21	93	0	82	20	10	28	42	1.84
2241--2346	21	4.9	21	64	19	56	20	17	26	34	1.95
2265--2313	23	2.1	23	81	7	55	22	20	22	34	1.97
2749--2796	25	1.9	25	83	8	62	31	8	6	54	1.55
3335--3390	16	3.3	17	79	18	55	33	14	12	39	1.83
3447--3507	17	3.6	17	73	8	61	34	14	9	40	1.79
3447--3517	34	2.1	34	83	0	88	36	14	8	40	1.76
4542--4661	64	1.9	63	84	1	159	35	20	17	25	1.95
5344--5427	23	3.7	23	75	0	87	23	22	22	30	1.99
5478--5521	21	2.1	21	100	0	88	20	18	22	38	1.93
12294--12354	23	2.7	23	92	0	104	18	27	26	27	1.98
12837--12876	20	2.0	21	85	14	57	42	5	7	45	1.54
13093--13234	63	2.2	64	83	3	171	30	26	16	27	1.96
19025--19080	22	2.7	21	83	10	62	30	23	17	28	1.97
21460--21499	20	2.0	21	85	14	57	42	5	7	45	1.54
21717--21878	64	2.5	64	84	5	211	30	26	16	27	1.96
25188--25234	14	3.3	14	77	13	51	36	29	0	34	1.58
25454--25489	18	1.9	19	88	5	56	83	2	5	8	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27480--27533	17	3.2	17	75	0	54	35	18	5	40	1.74
40152--40236	41	2.1	41	84	0	107	31	2	4	61	1.29
44483--44523	19	2.2	19	95	0	73	46	14	2	36	1.58
47685--47715	15	2.1	15	100	0	62	25	22	0	51	1.48
56675--56796	33	3.8	31	78	17	110	73	0	16	9	1.08
56720--56796	9	7.6	10	74	20	63	79	0	12	7	0.94
56705--56769	24	2.7	24	88	11	89	73	0	13	12	1.09
56782--56838	11	5.2	11	80	6	53	84	7	7	1	0.85
56687--56831	10	13.5	10	73	15	69	77	2	13	6	1.06
56753--56826	20	3.7	19	82	8	76	81	2	12	4	0.94
56806--56842	6	6.3	6	90	6	58	83	13	2	0	0.74
57968--58052	37	2.3	37	100	0	170	42	15	21	21	1.89
58054--58793	53	13.9	53	87	4	935	31	18	27	22	1.97
58054--58787	159	4.6	161	90	3	1060	31	18	27	22	1.97
63842--64606	379	2.0	384	95	2	1387	43	17	10	28	1.81
65914--65947	13	2.5	14	85	9	52	44	5	14	35	1.70
65914--65952	13	2.9	13	88	3	51	43	7	12	35	1.72

Tables:   1

The End!