genome.fa.s7030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007030.1 Hibiscus syriacus cultivar Beakdansim tig00018198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168833

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4733--4797	30	2.2	30	86	5	87	13	16	9	60	1.59
6560--6617	29	2.0	29	86	0	80	13	34	27	24	1.93
6689--6758	33	2.1	33	92	5	115	25	24	41	8	1.83
6762--6846	29	2.9	29	94	0	143	20	28	37	14	1.91
6905--6990	29	3.0	29	91	0	136	22	30	31	16	1.95
7215--7246	3	10.7	3	100	0	64	34	0	0	65	0.93
15505--15612	7	15.7	7	75	1	76	22	1	30	45	1.63
15499--15606	28	3.9	27	78	6	101	23	1	30	44	1.64
23763--23854	44	2.1	44	97	0	175	25	4	14	56	1.56
25995--26088	28	3.3	27	70	14	71	40	5	3	51	1.41
26123--26151	2	14.5	2	100	0	58	48	0	0	51	1.00
26080--26253	78	2.3	76	83	6	201	48	1	8	42	1.40
26600--26692	29	3.3	28	83	8	109	32	29	7	31	1.85
27346--27423	29	2.7	29	89	2	111	34	8	10	46	1.69
27246--27515	128	2.1	132	86	6	379	34	11	13	40	1.81
27375--27632	106	2.5	104	82	4	306	34	12	13	40	1.82
27585--27648	29	2.2	29	83	5	76	37	12	10	39	1.78
27734--27777	20	2.2	20	91	0	70	52	2	0	45	1.13
27734--27786	20	2.8	19	83	11	65	47	1	1	49	1.23
31885--32282	204	2.0	202	84	4	521	44	9	17	29	1.79
35399--35426	3	9.3	3	100	0	56	32	0	0	67	0.91
35731--35780	16	3.0	16	85	5	64	42	6	28	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38009--38067	29	2.0	29	100	0	118	49	13	13	23	1.78
41054--41112	29	2.0	29	100	0	118	49	13	13	23	1.78
45075--45123	23	2.1	23	84	0	62	57	4	0	38	1.18
45081--45128	23	2.1	23	88	0	69	47	2	0	50	1.12
45363--45404	18	2.5	17	82	17	52	66	2	0	30	1.04
49686--49745	29	2.1	29	87	0	84	18	30	31	20	1.96
50041--50111	10	6.7	10	72	23	56	25	38	25	11	1.89
50044--50071	14	2.0	14	100	0	56	21	42	28	7	1.79
50058--50112	20	2.8	20	88	0	92	27	36	25	10	1.89
50099--50157	23	2.6	23	91	0	100	25	27	33	13	1.93
50123--50203	33	2.5	33	86	4	103	27	24	38	9	1.87
50250--50309	23	2.6	23	86	5	77	10	36	26	26	1.88
50292--50338	14	3.4	14	96	0	85	6	29	40	23	1.79
50356--50429	29	2.6	29	100	0	148	10	25	40	22	1.87
51114--51164	22	2.4	21	81	9	68	72	5	0	21	1.05
53842--53941	31	3.2	31	84	0	146	22	9	16	53	1.70
53926--53955	14	2.1	14	100	0	60	20	0	13	66	1.24
55685--55755	31	2.3	32	81	16	87	30	0	11	57	1.34
56114--56143	15	1.9	16	93	6	53	40	6	6	46	1.56
58031--58064	5	6.8	5	100	0	68	17	0	41	41	1.50
58278--58324	21	2.3	21	85	3	60	40	21	4	34	1.73
58608--58773	60	2.8	59	79	10	144	30	25	7	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59860--59977	60	2.0	60	82	0	146	42	5	18	33	1.75
60791--60828	3	12.7	3	83	10	51	39	0	0	60	0.97
60789--60826	14	2.8	14	84	4	51	42	0	0	57	0.98
60791--60835	17	2.7	16	86	10	63	42	0	0	57	0.98
62265--62392	60	2.1	60	78	5	134	42	3	17	35	1.66
64820--64856	2	18.5	2	100	0	74	51	0	0	48	1.00
71491--71535	21	2.0	23	83	8	58	51	0	0	48	1.00
71488--71583	32	3.0	34	76	17	107	53	0	0	46	1.00
71546--71580	18	1.9	18	88	0	52	60	0	0	40	0.97
71544--71594	23	2.2	23	89	0	75	54	0	1	43	1.11
71488--71641	62	2.4	67	76	15	162	50	0	0	49	1.05
71641--71696	23	2.4	24	79	8	62	46	1	5	46	1.36
71846--71880	14	2.5	14	85	0	52	68	0	0	31	0.90
75245--75291	19	2.4	19	85	3	58	36	4	6	53	1.46
76443--76506	26	2.5	26	81	0	74	21	15	21	40	1.91
78144--78231	36	2.5	36	85	5	108	32	7	17	42	1.78
78663--78695	15	2.1	16	94	5	59	33	9	27	30	1.88
82714--82801	36	2.5	36	85	5	108	32	7	17	42	1.78
86151--86185	18	1.9	18	88	0	52	51	5	5	37	1.50
94386--94429	21	2.1	21	91	0	70	29	0	15	54	1.42
94399--94464	28	2.4	28	82	10	98	31	0	12	56	1.36
94995--95039	24	1.9	24	81	4	56	42	0	8	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95581--95616	12	3.0	12	91	0	63	33	5	25	36	1.79
95632--95705	29	2.6	29	97	2	141	43	16	21	18	1.88
97179--97213	17	1.9	17	88	11	52	2	37	0	60	1.12
98354--98669	150	2.1	150	95	1	573	26	17	21	34	1.96
98637--98681	23	2.0	23	86	0	63	20	26	26	26	1.99
100550--100601	23	2.3	23	83	3	61	61	1	3	32	1.25
102202--102259	26	2.3	26	93	3	100	8	36	10	44	1.69
102506--102564	29	2.0	29	86	0	82	23	27	35	13	1.92
103320--103367	15	3.4	14	77	11	53	45	2	2	50	1.25
103876--103905	16	1.9	15	93	6	51	36	0	3	60	1.14
104721--104792	31	2.4	30	81	9	85	40	9	11	38	1.74
109265--109312	15	3.2	15	96	0	87	33	14	0	52	1.42
111078--111132	24	2.4	22	77	14	58	40	1	3	54	1.28
111336--111368	17	1.9	17	100	0	66	60	0	0	39	0.97
118069--118126	30	1.9	31	82	10	75	55	27	8	8	1.60
119268--119315	22	2.2	21	78	10	53	58	6	18	16	1.59
126170--126236	33	2.0	33	94	0	116	32	2	8	55	1.46
132231--132282	15	3.5	15	81	0	68	13	19	61	5	1.52
135249--135292	8	5.6	8	84	15	65	77	0	0	22	0.77
137506--137539	16	2.1	16	94	0	59	32	8	26	32	1.87
146024--146071	23	2.1	23	88	0	69	35	12	18	33	1.89
146453--146504	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146463--146525	23	2.7	23	90	0	90	38	19	6	36	1.77
146926--147051	39	3.2	39	97	0	234	17	13	20	48	1.81
147310--147346	18	2.1	18	89	0	56	51	10	5	32	1.60
147594--147644	25	2.0	25	92	0	84	39	19	7	33	1.81
147910--147982	23	3.2	23	82	0	83	41	19	5	34	1.74
148341--148392	23	2.3	22	90	6	77	44	19	1	34	1.62
148351--148413	23	2.7	23	90	0	90	38	19	6	36	1.77
147676--148512	431	1.9	428	97	0	1593	39	12	8	39	1.73
150259--150324	33	2.0	33	90	0	105	22	48	0	28	1.51
150358--150422	21	3.1	21	80	6	69	15	29	15	40	1.88
152648--152690	20	2.3	18	82	17	61	18	16	11	53	1.72
152653--152699	20	2.3	20	89	10	78	17	17	10	55	1.69
152821--152866	20	2.3	20	89	10	76	17	17	10	54	1.70
156299--156351	24	2.2	24	80	3	63	16	18	20	43	1.88
156365--156410	3	16.0	3	82	8	60	60	0	0	39	0.97
158125--158180	28	2.0	28	86	3	78	42	3	3	50	1.37
158138--158353	37	5.8	37	80	13	221	43	3	6	46	1.45
158084--158206	64	1.9	65	84	1	167	43	3	6	47	1.45
158138--158358	75	3.0	73	82	12	258	44	3	6	45	1.45
158337--158415	30	2.5	32	89	4	117	46	1	5	46	1.32
158152--158378	37	6.2	35	75	15	129	44	3	5	46	1.42
158362--158415	16	3.2	18	69	28	55	46	0	5	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159662--159696	15	2.2	16	85	5	54	37	11	0	51	1.38
159803--159873	4	18.2	4	72	13	51	18	1	4	76	1.03
159827--159872	20	2.2	21	84	3	58	17	0	4	78	0.91
160842--160905	34	1.9	34	90	3	103	43	4	0	51	1.22
163481--163521	18	2.4	17	92	8	66	56	2	0	41	1.13
163488--163523	18	2.0	18	100	0	72	55	5	0	38	1.23
164184--164222	8	4.6	8	87	9	51	43	0	2	53	1.14
168363--168403	10	4.1	10	84	12	57	39	0	29	31	1.57

Tables:   1

The End!