genome.fa.s7031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007031.1 Hibiscus syriacus cultivar Beakdansim tig00018199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103797

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142--203	27	2.4	26	81	5	72	45	0	4	50	1.23
222--268	24	2.0	24	82	0	58	48	0	4	46	1.21
7871--8092	112	2.0	110	83	5	277	33	19	17	29	1.95
9986--10194	106	2.0	106	93	0	355	27	11	17	44	1.82
14579--14669	43	2.2	43	78	9	98	43	7	1	47	1.39
14904--14945	2	21.0	2	100	0	84	50	0	0	50	1.00
15445--15481	2	18.5	2	100	0	74	51	0	0	48	1.00
18810--18932	59	2.1	59	96	0	228	33	8	23	34	1.86
25519--25553	6	5.8	6	96	0	52	40	8	0	51	1.33
28126--28161	17	2.1	17	94	0	63	75	0	0	25	0.81
28259--28299	18	2.3	18	83	8	57	56	14	0	29	1.39
31035--31070	20	1.9	20	88	11	58	30	0	19	50	1.48
32318--32371	26	2.1	26	100	0	108	46	16	11	25	1.80
35373--35420	19	2.5	19	100	0	96	22	20	39	16	1.92
35542--35613	3	24.0	3	79	0	72	55	0	0	44	0.99
35533--35596	15	4.5	14	73	21	53	50	0	1	48	1.10
35518--35581	15	3.9	16	78	15	69	48	0	1	50	1.10
35542--35612	21	3.5	21	81	11	94	54	0	0	45	0.99
46356--46388	3	11.0	3	93	0	57	3	33	0	63	1.10
49368--49503	67	2.0	67	100	0	272	36	13	4	46	1.63
49695--49769	25	2.9	28	77	13	72	36	4	1	58	1.25
49699--49769	27	2.8	27	83	8	78	35	4	1	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49858--49977	31	3.9	32	78	12	110	59	1	4	35	1.27
49896--50024	31	4.5	28	76	13	88	55	0	3	40	1.18
49961--50048	25	3.4	26	81	13	85	50	2	3	44	1.31
50008--50090	23	3.7	23	73	16	59	53	3	2	40	1.32
50989--51087	27	3.5	28	80	4	119	56	0	7	36	1.27
50986--51091	55	1.9	54	88	5	160	56	0	7	35	1.28
50971--51091	28	4.4	27	72	13	86	56	0	6	37	1.26
51818--51859	20	2.1	20	86	8	59	61	4	9	23	1.45
61727--61790	22	2.9	22	88	0	92	37	10	17	34	1.85
80160--80212	20	2.7	20	87	0	79	24	26	20	28	1.99
80826--80882	14	3.7	14	72	20	51	10	26	21	42	1.85
80809--80967	33	4.8	33	86	4	230	14	22	18	44	1.86
80809--80966	67	2.4	67	89	3	230	14	22	18	44	1.86
83257--83281	12	2.1	12	100	0	50	0	28	0	72	0.86
83456--83509	24	2.2	24	90	0	81	40	20	16	22	1.91
84254--84304	20	2.5	20	100	0	102	29	19	31	19	1.97
84517--84566	19	2.5	20	96	3	93	32	28	24	16	1.96
84611--84656	19	2.4	19	100	0	92	15	19	17	47	1.82
84662--84700	20	2.0	20	94	0	69	12	10	30	46	1.75
86655--86721	20	3.4	20	81	2	73	38	23	22	14	1.92
86710--86767	14	3.9	14	79	16	71	48	24	17	10	1.78
86694--86772	32	2.4	33	95	2	142	46	22	18	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86801--86858	14	3.9	14	79	16	71	10	15	24	50	1.75
86784--86874	32	2.8	33	94	3	166	12	17	21	48	1.80
86859--86913	20	2.8	19	83	8	65	16	23	23	36	1.94
87395--87439	18	2.5	18	88	0	72	13	15	44	26	1.83
88758--88831	20	3.8	20	81	1	69	43	22	17	16	1.88
89274--89371	41	2.4	41	84	0	133	23	17	20	38	1.93
90041--90130	29	3.0	31	80	6	112	37	0	6	55	1.26
90043--90131	21	4.4	20	66	17	58	37	0	6	56	1.26
102847--102893	24	1.9	25	82	4	60	31	19	8	40	1.81

Tables:   1

The End!