Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007034.1 Hibiscus syriacus cultivar Beakdansim tig00018224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64315

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3342
7
491.4
7
85
9
4121
42
43
9
3
1.56
2256--6657
7
636.1
7
93
5
6744
31
43
12
12
1.80
6656--6704
7
7.0
7
95
0
89
16
57
26
0
1.40
6649--6704
21
2.7
21
94
0
94
17
55
25
1
1.52
7916--7974
29
2.0
29
100
0
118
20
10
28
40
1.85
8315--9372
527
2.0
527
99
0
2089
32
14
13
39
1.85
9668--9722
18
3.1
18
81
7
67
52
29
5
12
1.61
9668--9720
27
2.0
26
82
10
63
52
30
3
13
1.57
9680--9722
9
4.8
9
79
0
50
48
32
6
11
1.66
9753--9824
25
2.8
26
78
4
74
50
26
5
18
1.68
9784--9828
18
2.6
17
86
13
65
53
26
4
15
1.61
9832--9878
9
5.3
9
82
5
60
31
0
21
46
1.51
9834--9884
17
2.9
18
80
8
61
31
0
25
43
1.55
9832--9894
26
2.5
26
84
2
74
26
0
25
47
1.52
9966--10324
9
40.9
9
73
9
120
18
3
29
48
1.65
9966--10113
17
8.3
17
73
14
104
18
4
30
46
1.68
9993--10208
45
4.9
45
73
17
143
19
3
29
47
1.66
9960--10190
54
4.4
54
76
11
169
19
3
29
46
1.68
10029--10114
26
3.2
27
82
8
95
18
4
29
47
1.68
10282--10330
18
2.8
18
84
3
64
16
4
30
48
1.64
17162--17282
18
6.8
18
71
11
61
49
26
1
22
1.59
17126--17282
27
5.9
27
72
14
85
49
26
1
22
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17211--17347
9
15.4
9
70
11
77
48
27
2
21
1.61
21870--21898
2
14.5
2
100
0
58
48
0
0
51
1.00
23368--23401
12
2.8
12
86
0
50
8
14
44
32
1.76
23416--23509
2
50.0
2
70
12
56
47
0
0
52
1.00
23525--23561
12
3.0
12
96
4
65
10
16
56
16
1.66
24732--24779
25
1.9
25
83
8
62
39
0
4
56
1.19
27647--27685
19
2.1
19
100
0
78
10
58
0
30
1.31
29422--29480
27
2.2
27
81
6
75
28
28
11
30
1.92
29765--30137
188
2.0
188
96
0
683
25
13
19
42
1.87
31834--31892
10
5.7
10
76
7
55
23
6
3
66
1.32
31834--31892
21
2.8
21
75
7
66
23
6
3
66
1.32
43350--43415
27
2.4
27
97
0
123
46
0
0
53
1.00
43336--43423
27
3.0
30
80
14
103
47
0
0
52
1.00
43373--43418
14
3.4
14
71
17
51
45
0
0
54
0.99
45512--45540
15
2.0
15
93
6
51
48
3
13
34
1.60
47691--47774
41
2.0
41
88
0
123
28
10
19
41
1.84
49638--49696
2
29.5
2
100
0
118
49
0
0
50
1.00
55209--55258
24
2.1
24
85
7
66
58
12
2
28
1.45
57020--57062
20
2.2
20
86
0
59
30
13
20
34
1.92

Tables:   1

The End!