genome.fa.s7035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007035.1 Hibiscus syriacus cultivar Beakdansim tig00018232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67332

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10322--10404	22	3.8	22	83	0	103	34	20	16	27	1.94
12973--13000	2	14.0	2	100	0	56	50	0	0	50	1.00
13618--13648	2	15.5	2	93	0	53	45	3	0	51	1.17
27578--27652	21	3.7	20	81	3	78	28	25	17	29	1.97
27640--27868	20	11.4	20	85	3	232	37	25	17	20	1.93
28561--28607	24	2.0	24	87	8	69	25	14	21	38	1.92
28782--28806	12	2.1	12	100	0	50	72	0	28	0	0.86
31083--31253	53	3.2	52	80	8	170	46	16	21	15	1.83
31136--31229	33	2.8	33	95	1	170	46	17	22	13	1.83
31069--31247	86	2.1	86	94	0	313	47	17	21	13	1.82
31224--31339	53	2.2	52	86	3	160	18	23	18	38	1.93
31262--31349	19	4.8	19	82	14	123	13	22	15	47	1.81
31440--31476	14	2.6	14	91	0	65	45	21	0	32	1.52
33404--33540	19	7.4	19	79	8	149	45	27	18	8	1.78
33479--33571	33	2.8	33	90	0	150	46	23	20	9	1.80
33404--33540	52	2.5	55	88	7	190	45	27	18	8	1.78
33438--33576	52	2.7	52	76	8	156	46	24	20	8	1.79
33404--33576	19	9.6	19	75	12	141	45	24	19	9	1.81
33588--33646	14	3.9	14	76	20	64	6	16	28	47	1.72
33572--33695	33	3.7	33	91	1	185	8	17	27	45	1.78
33572--33663	19	5.4	18	72	24	83	7	17	28	46	1.75
33621--33677	14	3.7	14	72	20	51	8	22	24	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33743--34015	93	3.1	87	90	6	324	44	18	13	23	1.85
33793--34015	93	2.4	93	99	0	437	44	18	13	22	1.85
35709--35805	20	5.2	20	72	18	100	46	17	24	11	1.81
35707--35771	21	3.1	21	82	4	96	47	15	26	10	1.78
35756--35812	14	3.7	14	75	20	60	43	22	24	8	1.81
35707--35829	33	3.5	33	90	8	165	46	18	24	10	1.81
35857--35930	21	3.5	21	80	7	96	14	20	17	47	1.83
36010--36080	33	2.2	33	92	0	115	47	16	22	12	1.80
36460--36592	20	6.7	20	91	1	205	19	19	28	32	1.96
36459--36611	60	2.5	60	87	2	209	19	19	26	33	1.96
36605--36650	20	2.2	21	88	3	67	36	15	23	23	1.93
43117--43330	107	2.0	106	91	3	349	31	27	11	28	1.92
45374--45546	60	2.9	60	77	13	178	39	4	21	34	1.74
45399--45546	59	2.5	59	81	9	176	39	3	21	35	1.70
53728--54122	160	2.5	161	92	2	645	45	5	18	29	1.73
53976--54261	140	2.0	141	84	6	373	48	4	17	28	1.68
55002--55044	20	2.1	21	86	4	61	2	11	41	44	1.53
55063--55187	28	4.2	28	84	6	142	48	30	5	15	1.67
58803--58869	34	2.0	34	81	0	80	34	1	8	55	1.40
60394--60421	2	14.0	2	100	0	56	50	0	0	50	1.00
60922--60966	20	2.2	20	88	0	63	35	8	11	44	1.71
62413--62471	22	2.5	24	81	8	77	32	1	1	64	1.13

Tables:   1

The End!