genome.fa.s7037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007037.1 Hibiscus syriacus cultivar Beakdansim tig00018240_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194960

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747--4875	52	2.5	51	86	2	161	17	31	34	17	1.93
5177--5275	3	33.3	3	87	9	141	65	1	1	32	1.06
7453--7522	33	2.2	33	87	7	99	44	0	0	55	0.99
7662--7717	22	2.5	22	82	8	60	35	1	3	58	1.26
9916--9984	34	2.0	34	94	0	120	55	7	2	34	1.43
10537--10657	61	2.0	61	86	0	170	33	19	21	25	1.96
10602--10957	143	2.5	141	89	1	523	33	25	19	21	1.97
14446--14558	60	1.9	60	87	3	165	24	31	28	15	1.95
15354--15396	20	2.3	19	88	11	70	23	30	9	37	1.86
15359--15396	20	1.9	20	100	0	76	23	28	10	36	1.88
20018--20069	24	2.2	23	82	3	59	23	23	21	32	1.98
22467--22515	21	2.3	21	85	0	62	32	26	16	24	1.96
28093--28140	21	2.3	21	92	0	78	31	29	18	20	1.97
28916--29048	55	2.4	55	80	8	155	28	18	19	33	1.96
30371--30867	54	9.2	54	86	1	584	27	19	19	33	1.96
34916--35250	54	6.2	54	86	1	456	25	18	21	34	1.96
34929--35248	162	2.0	162	90	0	505	25	18	21	34	1.96
40983--41012	15	2.0	15	93	0	51	70	13	10	6	1.34
43785--43871	41	2.1	41	85	8	115	33	6	11	48	1.66
44019--44055	19	1.9	19	88	0	56	48	0	0	51	1.00
44829--44853	5	5.0	5	100	0	50	80	0	0	20	0.72
45401--45489	47	1.9	46	84	6	117	44	3	20	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50616--50640	13	1.9	13	100	0	50	76	8	8	8	1.18
54158--54203	18	2.5	19	82	13	60	73	0	10	15	1.08
54158--54202	19	2.4	18	85	10	56	73	0	11	15	1.10
54314--54352	9	4.0	9	81	18	51	82	0	2	15	0.79
60260--60288	12	2.3	13	94	5	51	75	6	10	6	1.17
60662--60697	17	2.1	17	100	0	72	16	27	16	38	1.90
62372--62598	80	2.8	79	82	5	242	27	20	17	35	1.94
62566--62630	20	3.3	20	68	10	62	26	21	12	40	1.88
67818--67856	18	2.2	18	86	4	53	53	2	2	41	1.28
70802--70836	15	2.3	15	100	0	70	25	20	5	48	1.71
72401--72446	11	4.2	11	94	0	74	0	47	0	52	1.00
75140--75178	18	2.3	18	86	8	55	10	10	0	79	0.94
75837--76162	69	4.7	69	78	3	280	25	25	18	30	1.98
77269--77320	10	5.4	10	80	15	56	1	25	0	73	0.94
77269--77317	19	2.6	19	83	6	64	2	24	0	73	0.94
82738--83359	59	10.5	59	83	5	603	37	10	21	30	1.88
83188--83343	60	2.6	60	94	2	269	33	12	23	30	1.92
83496--83847	44	8.0	44	96	0	634	41	6	17	34	1.76
84703--84865	74	2.2	73	84	5	220	28	14	23	33	1.94
86310--86425	30	4.0	29	80	11	130	37	10	5	47	1.60
86308--86425	59	2.0	59	83	6	150	37	10	5	47	1.59
86760--86864	48	2.2	49	91	1	167	19	16	27	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92094--92128	18	1.9	18	88	11	54	74	0	2	22	0.95
92190--92251	25	2.4	26	79	15	67	46	1	0	51	1.10
97157--97499	131	2.6	129	80	3	400	40	16	11	31	1.83
99529--99581	25	2.1	25	85	0	70	64	0	0	35	0.94
99717--100103	134	2.9	134	87	2	553	29	16	23	30	1.96
100758--100863	49	2.2	49	86	3	142	24	17	16	40	1.90
106914--107029	49	2.4	49	83	4	144	27	14	13	43	1.83
108482--108919	134	3.3	133	83	2	529	29	15	22	32	1.95
108490--108930	133	3.3	132	83	2	551	29	15	22	32	1.95
108821--109028	103	2.0	103	86	3	294	32	13	23	30	1.93
112995--113033	16	2.4	16	95	0	69	46	12	17	23	1.83
116717--117074	131	2.7	132	82	3	402	41	16	10	31	1.82
119188--119221	3	11.0	3	87	6	50	67	2	0	29	1.05
120046--120094	19	2.6	20	78	9	59	44	2	0	53	1.12
120207--120295	42	2.2	42	85	4	128	43	1	2	52	1.20
120214--120288	22	3.5	22	71	14	66	48	1	2	48	1.24
120201--120319	42	2.9	39	81	14	118	46	2	1	49	1.25
120368--120435	27	2.5	28	76	9	79	50	0	1	48	1.10
122468--122843	40	9.1	40	68	12	179	17	18	31	32	1.94
122433--122843	83	5.0	83	84	2	529	18	17	31	32	1.95
122526--122823	43	7.1	43	69	14	167	17	17	32	32	1.94
122755--123234	139	3.5	139	84	3	599	24	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126479--126532	18	2.9	18	83	8	56	0	18	5	75	0.98
131998--132162	74	2.2	75	92	1	278	50	3	16	29	1.62
131987--132156	32	4.9	32	76	19	162	52	4	14	28	1.60
131991--132162	40	4.6	36	73	15	145	52	3	15	28	1.59
132175--132503	121	2.6	125	84	7	418	45	14	16	24	1.84
132390--132422	5	6.8	5	89	6	50	78	0	3	18	0.87
132391--132421	14	2.2	14	94	0	53	77	0	3	19	0.90
132270--132521	131	1.9	130	87	4	364	48	13	15	23	1.79
134407--134455	15	3.3	15	91	0	71	38	0	8	53	1.31
140588--140939	43	8.2	44	74	11	220	30	20	24	25	1.98
140586--140745	83	1.9	83	87	2	232	29	23	25	21	1.99
140552--140924	42	8.7	42	74	11	217	30	19	23	27	1.98
144634--145023	41	9.5	41	73	9	258	32	19	18	29	1.96
148144--148196	22	2.5	22	81	6	65	33	15	22	28	1.94
148074--148293	95	2.3	94	88	0	314	36	14	22	26	1.92
148514--148545	16	2.0	16	100	0	64	50	18	18	12	1.78
148633--148744	55	2.0	56	91	3	181	35	8	19	35	1.83
148954--149481	68	7.8	68	93	0	858	32	14	24	27	1.95
149681--149727	20	2.3	20	85	0	67	42	6	27	23	1.78
157098--157159	30	2.1	30	100	0	124	20	16	6	56	1.62
170392--170444	19	2.8	19	82	0	70	28	15	26	30	1.96
174104--174155	3	17.3	3	100	0	104	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187262--187295	16	2.1	16	88	0	50	44	8	5	41	1.60

Tables:   1

The End!