Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000704.1 Hibiscus syriacus cultivar Beakdansim tig00001369_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68090

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4350--4625
137
2.0
139
97
1
529
40
5
5
48
1.50
6035--6150
59
2.0
60
86
5
164
31
10
18
39
1.85
9141--9182
22
1.9
22
90
9
68
30
16
4
47
1.67
12130--12468
162
2.1
162
88
1
509
41
12
17
29
1.85
12431--12491
20
3.1
19
77
9
68
57
9
14
18
1.64
12636--12690
24
2.3
24
84
6
67
52
12
7
27
1.65
14695--14759
21
3.1
21
93
0
103
41
10
30
16
1.83
14793--14858
33
2.0
33
90
0
105
28
0
48
22
1.51
16649--16697
19
2.6
19
93
0
80
30
2
10
57
1.43
16816--18794
200
9.9
200
97
0
3681
36
15
16
31
1.90
20256--20319
6
10.7
6
79
0
65
39
9
32
18
1.83
20273--20371
3
33.0
3
83
0
63
35
12
33
19
1.88
20256--20367
12
9.3
12
84
0
98
36
12
33
17
1.88
22219--22711
183
2.7
184
95
1
884
34
15
18
32
1.92
25128--25235
42
2.6
42
100
0
216
42
10
10
37
1.73
25598--25670
23
3.2
23
88
0
101
34
4
21
39
1.73
26027--26099
23
3.2
23
88
0
101
34
4
21
39
1.73
26961--27019
25
2.4
24
78
15
59
44
3
1
50
1.28
27782--27843
20
3.1
20
71
13
56
54
4
4
35
1.43
30347--30399
19
2.8
19
85
0
70
20
28
24
26
1.99
33109--33168
13
4.8
13
76
15
72
26
0
1
71
0.95
33109--33173
21
3.3
20
73
20
66
26
0
1
72
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33111--33173
29
2.2
29
83
11
76
25
0
1
73
0.93
33113--33155
16
2.7
16
88
0
59
25
0
2
72
0.97
33425--33484
13
4.8
13
78
15
72
71
1
0
26
0.95
33420--33464
21
2.1
21
91
0
72
75
0
0
24
0.80
33420--33480
16
4.0
16
77
12
56
72
1
0
26
0.94
33420--33472
21
2.5
21
87
0
70
73
1
0
24
0.93
33420--33484
21
3.3
20
73
20
66
72
1
0
26
0.94
38347--38379
17
1.9
17
100
0
66
15
24
42
18
1.88
38368--38396
14
2.1
14
100
0
58
0
24
55
20
1.44
38406--38462
19
2.9
20
80
15
73
36
26
21
15
1.93
45668--45696
14
2.1
14
100
0
58
0
24
55
20
1.44
45693--45764
20
3.7
18
73
14
63
31
23
26
18
1.97
46959--47121
65
2.5
65
84
3
213
30
26
15
27
1.96
53652--53712
21
2.9
21
75
4
61
22
40
6
29
1.79
54512--54555
21
2.1
21
91
0
70
6
36
15
40
1.74
55592--55630
19
2.1
19
95
0
69
20
38
15
25
1.92
55578--55740
65
2.5
65
84
1
220
30
26
15
27
1.96
66957--67004
25
1.9
25
95
0
87
31
18
20
29
1.97
66965--67009
17
2.6
17
82
6
56
33
17
20
28
1.95

Tables:   1

The End!