Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007041.1 Hibiscus syriacus cultivar Beakdansim tig00018252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 187453
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:7370 original size:2 final size:2
Alignment explanation
Indices: 7363--7611 Score: 346
Period size: 2 Copynumber: 127.0 Consensus size: 2
7353 TCTTTTCCTC
7363 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
7405 CT CT CT CT CC CT CT CT CT CT CC CT CT CT CT CC CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7447 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
7489 CC CT CT CT CT CT CT CT CT CT CT CC CT CT CT C- CC CT CC CT C-
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
7529 CT CC CT C- CT CC CT CC CT CT C- CT CC CT CT C- CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7568 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7610 CT
1 CT
7612 TATTATCTAT
Statistics
Matches: 217, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
1 5 0.02
2 212 0.98
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:19325 original size:21 final size:21
Alignment explanation
Indices: 19296--19347 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
19286 TTTGTTTCAT
* *
19296 TGAAGCCAGGTTTTGATTTATG
1 TGAA-CCAGATTTTGATTTACG
*
19318 TGTACCAGATTTTGATTTACG
1 TGAACCAGATTTTGATTTACG
19339 TGAACCAGA
1 TGAACCAGA
19348 AACCTTAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (21 bp):
TGAACCAGATTTTGATTTACG
Found at i:25450 original size:15 final size:15
Alignment explanation
Indices: 25432--25461 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25422 ATAAAAATAA
25432 GTAATATATTTATTT
1 GTAATATATTTATTT
*
25447 GTAATCTATTTATTT
1 GTAATATATTTATTT
25462 ATCGTTTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (15 bp):
GTAATATATTTATTT
Found at i:25681 original size:19 final size:18
Alignment explanation
Indices: 25659--25700 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
25649 TTTAAATAAA
25659 AAAATACATAGAAAATTTT
1 AAAATACAT-GAAAATTTT
* *
25678 AAAATATATGATAATTTT
1 AAAATACATGAAAATTTT
25696 AAAAT
1 AAAAT
25701 TTTAGGGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (18 bp):
AAAATACATGAAAATTTT
Found at i:57348 original size:31 final size:31
Alignment explanation
Indices: 57310--57390 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
57300 TTCATAGATT
* *
57310 CCGAAGAACCTAGGTAATCAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
57341 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
57372 CCGAAGAACATAGGTAAAC
1 CCGAAGAACATAGGTAAAC
57391 CATCGACCCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAACAGTCCATATGTC
Found at i:60768 original size:54 final size:54
Alignment explanation
Indices: 60704--60816 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
60694 GAAACAACCG
*
60704 GAATCTATGAACAAATAACCGTTTTGAGCTCTATAAATAGATCTCGACAACCAA
1 GAATCTATGAACAAATAACCGTTTTGAGCTCCATAAATAGATCTCGACAACCAA
* * * *
60758 GAATTTATGAACAAATAACCGTTTTGAGCTCCATAAATGGATCTCGACAATCAG
1 GAATCTATGAACAAATAACCGTTTTGAGCTCCATAAATAGATCTCGACAACCAA
60812 GAATC
1 GAATC
60817 CATGGAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (54 bp):
GAATCTATGAACAAATAACCGTTTTGAGCTCCATAAATAGATCTCGACAACCAA
Found at i:62437 original size:16 final size:16
Alignment explanation
Indices: 62416--62449 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
62406 TTTTAAATTT
62416 TTATTTAAATATTTTA
1 TTATTTAAATATTTTA
*
62432 TTATTTGAATATTTTA
1 TTATTTAAATATTTTA
62448 TT
1 TT
62450 CTTATCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTATTTAAATATTTTA
Found at i:65093 original size:42 final size:42
Alignment explanation
Indices: 65040--65131 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
65030 TTAAAAACTT
* *
65040 AAATCAAACTTATTTAAATTAAGTATTAATATAATTTTAATC
1 AAATCAAACTTATTTAAATTAAATATTAATATAACTTTAATC
65082 AAATCAAACTTATTTAAATTAAATATTAATATAACTTTAATC
1 AAATCAAACTTATTTAAATTAAATATTAATATAACTTTAATC
65124 AAATCAAA
1 AAATCAAA
65132 TTTTAAGCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (42 bp):
AAATCAAACTTATTTAAATTAAATATTAATATAACTTTAATC
Found at i:70301 original size:30 final size:31
Alignment explanation
Indices: 70235--70305 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
70225 CGTCGTGGAT
**
70235 CATATTGCAAATTGACTAAATTTTGAGGGAC
1 CATATTGCAAACGGACTAAATTTTGAGGGAC
70266 CATATTGCAAACGGACTAAATTTTG-GGGAC
1 CATATTGCAAACGGACTAAATTTTGAGGGAC
*
70296 TATATTGCAA
1 CATATTGCAA
70306 TTTTTAAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 14 0.38
31 23 0.62
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (31 bp):
CATATTGCAAACGGACTAAATTTTGAGGGAC
Found at i:71291 original size:3 final size:3
Alignment explanation
Indices: 71280--71326 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
71270 TACTCTTCTT
* * *
71280 CTC CCC CTC CTC CTC CTC CTT CTT CTC CTC CTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
71327 ACTAATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (3 bp):
CTC
Found at i:71306 original size:24 final size:24
Alignment explanation
Indices: 71274--71323 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
71264 TCGCCGTACT
71274 CTTCTTCTCCCCCTCCTCCTCCTC
1 CTTCTTCTCCCCCTCCTCCTCCTC
*
71298 CTTCTTCTCCTCCTCCTCCTCCTC
1 CTTCTTCTCCCCCTCCTCCTCCTC
71322 CT
1 CT
71324 CCTACTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (24 bp):
CTTCTTCTCCCCCTCCTCCTCCTC
Found at i:71725 original size:31 final size:31
Alignment explanation
Indices: 71684--71760 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
71674 AGTTACATCG
* *
71684 GGGACCATATTGCAAACGGACTAAGTGTTGA
1 GGGACAATATTGCAAACGGACTAAATGTTGA
*
71715 GGGACAATATTACAAACGGACTAAATGTTGA
1 GGGACAATATTGCAAACGGACTAAATGTTGA
* **
71746 GAGACTGTATTGCAA
1 GGGACAATATTGCAA
71761 GTTTTAAAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.23
Consensus pattern (31 bp):
GGGACAATATTGCAAACGGACTAAATGTTGA
Found at i:72876 original size:2 final size:2
Alignment explanation
Indices: 72869--72896 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72859 TTGGAACTCT
72869 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72897 AGTTCCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76982 original size:31 final size:30
Alignment explanation
Indices: 76940--76998 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 30
76930 TTTATGTTAT
76940 GAGAAACTTGAATTTATAAAATTTTAGGAG
1 GAGAAACTTGAATTTATAAAATTTTAGGAG
*
76970 GAGAGAACTTGAATTTATAGAATTTTAGG
1 GAGA-AACTTGAATTTATAAAATTTTAGG
76999 GGGTGAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (30 bp):
GAGAAACTTGAATTTATAAAATTTTAGGAG
Found at i:91214 original size:15 final size:15
Alignment explanation
Indices: 91194--91224 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91184 TCCCAGAAAG
*
91194 AAAGATGAGTTTTAT
1 AAAGATGAGTTGTAT
91209 AAAGATGAGTTGTAT
1 AAAGATGAGTTGTAT
91224 A
1 A
91225 TGAATCTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (15 bp):
AAAGATGAGTTGTAT
Found at i:94077 original size:535 final size:535
Alignment explanation
Indices: 93068--94135 Score: 2136
Period size: 535 Copynumber: 2.0 Consensus size: 535
93058 GGATCATCAA
93068 ACGTGACCAAAACTCAACCAGAGACTGGACTGATCTTCCTGATCTATTGCCATCTATTGCTGAAC
1 ACGTGACCAAAACTCAACCAGAGACTGGACTGATCTTCCTGATCTATTGCCATCTATTGCTGAAC
93133 GTTTGGGCTTCTTCGAGCTTCTCCGATTCCAAGCCGTCTGCAAGGACTGGCCTCTTCCGGCATCT
66 GTTTGGGCTTCTTCGAGCTTCTCCGATTCCAAGCCGTCTGCAAGGACTGGCCTCTTCCGGCATCT
93198 TGGACAAGATCGAAACTGTATCGGATCACGAGCCCTTGTTCCTATTATACGGTGACTATAATTCC
131 TGGACAAGATCGAAACTGTATCGGATCACGAGCCCTTGTTCCTATTATACGGTGACTATAATTCC
93263 ACATGCACATTGGTTACTGAATCCGAAAAACACACTACTAATATTCCGGAACTGAACGGAACAAC
196 ACATGCACATTGGTTACTGAATCCGAAAAACACACTACTAATATTCCGGAACTGAACGGAACAAC
93328 CTGCCTAGCATCGAGCCAAGGGTGGCTCCTACTATTCCGTGAAGGTGGCTCAATATTCTTCTTTG
261 CTGCCTAGCATCGAGCCAAGGGTGGCTCCTACTATTCCGTGAAGGTGGCTCAATATTCTTCTTTG
93393 GTCCATTGTCCCGTGCCAAAATACACATCCCGGTGAAATTCCCTCACCCGGTAATCTCCAACCAT
326 GTCCATTGTCCCGTGCCAAAATACACATCCCGGTGAAATTCCCTCACCCGGTAATCTCCAACCAT
93458 GTCGCAATCTTTACAGCTCCGCCGACGTCGAAAGACTGCATCGTCGGCATCATCTTTAACTGAAA
391 GTCGCAATCTTTACAGCTCCGCCGACGTCGAAAGACTGCATCGTCGGCATCATCTTTAACTGAAA
93523 AACCTACACTGAACTCGAATTGCACATGATTGGCCGTGGAGGAGCCAGTCCTTTGTTAGAAGTTA
456 AACCTACACTGAACTCGAATTGCACATGATTGGCCGTGGAGGAGCCAGTCCTTTGTTAGAAGTTA
93588 GTTGTTAAGTATAGC
521 GTTGTTAAGTATAGC
93603 ACGTGACCAAAACTCAACCAGAGACTGGACTGATCTTCCTGATCTATTGCCATCTATTGCTGAAC
1 ACGTGACCAAAACTCAACCAGAGACTGGACTGATCTTCCTGATCTATTGCCATCTATTGCTGAAC
93668 GTTTGGGCTTCTTCGAGCTTCTCCGATTCCAAGCCGTCTGCAAGGACTGGCCTCTTCCGGCATCT
66 GTTTGGGCTTCTTCGAGCTTCTCCGATTCCAAGCCGTCTGCAAGGACTGGCCTCTTCCGGCATCT
93733 TGGACAAGATCGAAACTGTATCGGATCACGAGCCCTTGTTCCTATTATACGGTGACTATAATTCC
131 TGGACAAGATCGAAACTGTATCGGATCACGAGCCCTTGTTCCTATTATACGGTGACTATAATTCC
93798 ACATGCACATTGGTTACTGAATCCGAAAAACACACTACTAATATTCCGGAACTGAACGGAACAAC
196 ACATGCACATTGGTTACTGAATCCGAAAAACACACTACTAATATTCCGGAACTGAACGGAACAAC
93863 CTGCCTAGCATCGAGCCAAGGGTGGCTCCTACTATTCCGTGAAGGTGGCTCAATATTCTTCTTTG
261 CTGCCTAGCATCGAGCCAAGGGTGGCTCCTACTATTCCGTGAAGGTGGCTCAATATTCTTCTTTG
93928 GTCCATTGTCCCGTGCCAAAATACACATCCCGGTGAAATTCCCTCACCCGGTAATCTCCAACCAT
326 GTCCATTGTCCCGTGCCAAAATACACATCCCGGTGAAATTCCCTCACCCGGTAATCTCCAACCAT
93993 GTCGCAATCTTTACAGCTCCGCCGACGTCGAAAGACTGCATCGTCGGCATCATCTTTAACTGAAA
391 GTCGCAATCTTTACAGCTCCGCCGACGTCGAAAGACTGCATCGTCGGCATCATCTTTAACTGAAA
94058 AACCTACACTGAACTCGAATTGCACATGATTGGCCGTGGAGGAGCCAGTCCTTTGTTAGAAGTTA
456 AACCTACACTGAACTCGAATTGCACATGATTGGCCGTGGAGGAGCCAGTCCTTTGTTAGAAGTTA
94123 GTTGTTAAGTATA
521 GTTGTTAAGTATA
94136 ACTGAGGTTC
Statistics
Matches: 533, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
535 533 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (535 bp):
ACGTGACCAAAACTCAACCAGAGACTGGACTGATCTTCCTGATCTATTGCCATCTATTGCTGAAC
GTTTGGGCTTCTTCGAGCTTCTCCGATTCCAAGCCGTCTGCAAGGACTGGCCTCTTCCGGCATCT
TGGACAAGATCGAAACTGTATCGGATCACGAGCCCTTGTTCCTATTATACGGTGACTATAATTCC
ACATGCACATTGGTTACTGAATCCGAAAAACACACTACTAATATTCCGGAACTGAACGGAACAAC
CTGCCTAGCATCGAGCCAAGGGTGGCTCCTACTATTCCGTGAAGGTGGCTCAATATTCTTCTTTG
GTCCATTGTCCCGTGCCAAAATACACATCCCGGTGAAATTCCCTCACCCGGTAATCTCCAACCAT
GTCGCAATCTTTACAGCTCCGCCGACGTCGAAAGACTGCATCGTCGGCATCATCTTTAACTGAAA
AACCTACACTGAACTCGAATTGCACATGATTGGCCGTGGAGGAGCCAGTCCTTTGTTAGAAGTTA
GTTGTTAAGTATAGC
Found at i:95461 original size:36 final size:36
Alignment explanation
Indices: 95414--95554 Score: 176
Period size: 36 Copynumber: 3.9 Consensus size: 36
95404 TGAATAAGAA
*
95414 GAACGAAAGGAAACATCAACACTTTCGATTCAAAGT
1 GAACGAAAGGAAACATCAGCACTTTCGATTCAAAGT
* * * *
95450 GAACGGAAGGAAGCATCAGTACTTTCGATTC-AAGAA
1 GAACGAAAGGAAACATCAGCACTTTCGATTCAAAG-T
95486 GAACGAAAGGAAACATCAGCACTTTCGATTCAAAGT
1 GAACGAAAGGAAACATCAGCACTTTCGATTCAAAGT
* * * * *
95522 GAACGGAAGGAAGCATCGGTACTTTCGACTCAA
1 GAACGAAAGGAAACATCAGCACTTTCGATTCAA
95555 TTGTTCATCT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.03
36 83 0.93
37 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (36 bp):
GAACGAAAGGAAACATCAGCACTTTCGATTCAAAGT
Found at i:95495 original size:72 final size:72
Alignment explanation
Indices: 95409--95554 Score: 265
Period size: 72 Copynumber: 2.0 Consensus size: 72
95399 AAAGGTGAAT
95409 AAGAAGAACGAAAGGAAACATCAACACTTTCGATTCAAAGTGAACGGAAGGAAGCATCAGTACTT
1 AAGAAGAACGAAAGGAAACATCAACACTTTCGATTCAAAGTGAACGGAAGGAAGCATCAGTACTT
*
95474 TCGATTC
66 TCGACTC
* *
95481 AAGAAGAACGAAAGGAAACATCAGCACTTTCGATTCAAAGTGAACGGAAGGAAGCATCGGTACTT
1 AAGAAGAACGAAAGGAAACATCAACACTTTCGATTCAAAGTGAACGGAAGGAAGCATCAGTACTT
95546 TCGACTC
66 TCGACTC
95553 AA
1 AA
95555 TTGTTCATCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.18
Consensus pattern (72 bp):
AAGAAGAACGAAAGGAAACATCAACACTTTCGATTCAAAGTGAACGGAAGGAAGCATCAGTACTT
TCGACTC
Found at i:108707 original size:21 final size:21
Alignment explanation
Indices: 108665--108707 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
108655 TTTCTGGGTT
* * *
108665 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
108686 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
108707 A
1 A
108708 CGAAATGAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:108768 original size:66 final size:67
Alignment explanation
Indices: 108665--108838 Score: 217
Period size: 67 Copynumber: 2.6 Consensus size: 67
108655 TTTCTGGGTT
* * *
108665 AGGGGAATCGGTACCCATTCA-AGGGGAACCGATACCCCCTCAACG-AAATGAATTTCCAGAATG
1 AGGGGAATCGGTACCC--CCAGGGGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATG
108728 CTAG
64 CTAG
* * *
108732 AGGGGAATCGGTACCCCCAGGGGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCT
1 AGGGGAATCGGTACCCCCAGGGGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCT
*
108797 TG
66 AG
* *
108799 AGGGGAATCGATACCCCCAGGGGGGGGAACCGATTCCCCC
1 AGGGGAATCGGTACCCCCA--GGGGGGAACCGATACCCCC
108839 ATGAGAAAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
65 2 0.02
66 22 0.23
67 52 0.55
69 18 0.19
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (67 bp):
AGGGGAATCGGTACCCCCAGGGGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCT
AG
Found at i:109175 original size:29 final size:29
Alignment explanation
Indices: 109141--109212 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
109131 CATATTATGA
**
109141 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
109170 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
109199 TACATGACATGAAT
1 TACATGACATGAAT
109213 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:109566 original size:23 final size:22
Alignment explanation
Indices: 109506--109573 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
109496 TTATGGACAT
109506 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
109528 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
109550 AATTCTACGGGGCACTTCGGTGC
1 AATTCTAC-GGGCACTTCGGTGC
109573 A
1 A
109574 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:113920 original size:20 final size:19
Alignment explanation
Indices: 113876--114286 Score: 294
Period size: 20 Copynumber: 20.5 Consensus size: 19
113866 AATGACCAAC
113876 AAAATCGCAACGCGATATC-
1 AAAATCGCAACGCGAT-TCA
*
113895 AAAATCGCAACGCGATTTA
1 AAAATCGCAACGCGATTCA
* **
113914 GAAAATCGCAACGTTGA-AAA
1 -AAAATCGCAACG-CGATTCA
113934 GAAAATCGCAACG-G--TCAAAA
1 -AAAATCGCAACGCGATTC---A
113954 GAAAATCGCAACGCGATCTTCCA
1 -AAAATCGCAACGCGA--TT-CA
* * *
113977 AGAATCGCAATGCGATCCA
1 AAAATCGCAACGCGATTCA
* *
113996 AAGAATCGCAATGCGATCCA
1 AA-AATCGCAACGCGATTCA
*
114016 AAGAATCGCAATGCGATTCCA
1 AA-AATCGCAACGCGATT-CA
* * *
114037 AGAATCGCAATGCGATCCA
1 AAAATCGCAACGCGATTCA
*
114056 AAGAATCGCAATGCGATTCCA
1 AA-AATCGCAACGCGATT-CA
* * *
114077 AGAATCGCAATGCGATCCA
1 AAAATCGCAACGCGATTCA
*
114096 AAGAATCGCAATGCGATTCCA
1 AA-AATCGCAACGCGATT-CA
* *
114117 AGAATCGCAATGCGATTCA
1 AAAATCGCAACGCGATTCA
114136 AAGAATCGCAACGCGA-TCGA
1 AA-AATCGCAACGCGATTC-A
114156 GAAAATCGCAACGCGATTCCA
1 -AAAATCGCAACGCGATT-CA
* *
114177 ATAATCGCAACGCGATTGA
1 AAAATCGCAACGCGATTCA
114196 GAAAATCGCAACGCGATTCCA
1 -AAAATCGCAACGCGATT-CA
*
114217 AGAATCGCAACGCGATTCCA
1 AAAATCGCAACGCGATT-CA
* *
114237 AGAATCGCAACGCGATTGA
1 AAAATCGCAACGCGATTCA
*
114256 GAAAATCGCAATGCGATTCCA
1 -AAAATCGCAACGCGATT-CA
*
114277 AGAATCGCAA
1 AAAATCGCAA
114287 AACGGAAAAA
Statistics
Matches: 333, Mismatches: 32, Indels: 53
0.80 0.08 0.13
Matches are distributed among these distances:
18 2 0.01
19 32 0.10
20 264 0.79
21 18 0.05
22 14 0.04
23 1 0.00
25 1 0.00
26 1 0.00
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.16
Consensus pattern (19 bp):
AAAATCGCAACGCGATTCA
Found at i:114029 original size:40 final size:40
Alignment explanation
Indices: 113957--114286 Score: 402
Period size: 40 Copynumber: 8.2 Consensus size: 40
113947 GTCAAAAGAA
*
113957 AATCGCAACGCGATCTTCCAAGAATCGCAATGCGA-TCCAAAG
1 AATCGCAACGCGATC--CAAAGAATCGCAATGCGATTCC-AAG
*
113999 AATCGCAATGCGATCCAAAGAATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATCCAAAGAATCGCAATGCGATTCCAAG
*
114039 AATCGCAATGCGATCCAAAGAATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATCCAAAGAATCGCAATGCGATTCCAAG
*
114079 AATCGCAATGCGATCCAAAGAATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATCCAAAGAATCGCAATGCGATTCCAAG
* * * * *
114119 AATCGCAATGCGATTCAAAGAATCGCAACGCGA-TCGAGAA
1 AATCGCAACGCGATCCAAAGAATCGCAATGCGATTCCA-AG
* * * *
114159 AATCGCAACGCGATTCC-AATAATCGCAACGCGATT-GAGAA
1 AATCGCAACGCGA-TCCAAAGAATCGCAATGCGATTCCA-AG
*
114199 AATCGCAACGCGATTCC-AAGAATCGCAACGCGATTCCAAG
1 AATCGCAACGCGA-TCCAAAGAATCGCAATGCGATTCCAAG
**
114239 AATCGCAACGCGATTGAGAA-AATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATCCA-AAGAATCGCAATGCGATTCCAAG
114279 AATCGCAA
1 AATCGCAA
114287 AACGGAAAAA
Statistics
Matches: 266, Mismatches: 15, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
39 4 0.02
40 239 0.90
41 9 0.03
42 14 0.05
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (40 bp):
AATCGCAACGCGATCCAAAGAATCGCAATGCGATTCCAAG
Found at i:114052 original size:60 final size:60
Alignment explanation
Indices: 113957--114286 Score: 420
Period size: 60 Copynumber: 5.5 Consensus size: 60
113947 GTCAAAAGAA
*
113957 AATCGCAACGCGATCTTCCAAGAATCGCAATGCGA-TCCAAAGAATCGCAATGCGATCCAAAG
1 AATCGCAACGCGA--TTCCAAGAATCGCAATGCGATTCC-AAGAATCGCAATGCGATTCAAAG
* *
114019 AATCGCAATGCGATTCCAAGAATCGCAATGCGA-TCCAAAGAATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATTCCAAGAATCGCAATGCGATTCC-AAGAATCGCAATGCGATTCAAAG
*
114079 AATCGCAATGCGA-TCCAAAGAATCGCAATGCGATTCCAAGAATCGCAATGCGATTCAAAG
1 AATCGCAACGCGATTCC-AAGAATCGCAATGCGATTCCAAGAATCGCAATGCGATTCAAAG
* * * * * *
114139 AATCGCAACGCGA-TCGAGAAAATCGCAACGCGATTCCAATAATCGCAACGCGATTGAGAA-
1 AATCGCAACGCGATTCCA-AGAATCGCAATGCGATTCCAAGAATCGCAATGCGATTCA-AAG
* * *
114199 AATCGCAACGCGATTCCAAGAATCGCAACGCGATTCCAAGAATCGCAACGCGATTGAGAA-
1 AATCGCAACGCGATTCCAAGAATCGCAATGCGATTCCAAGAATCGCAATGCGATTCA-AAG
*
114259 AATCGCAATGCGATTCCAAGAATCGCAA
1 AATCGCAACGCGATTCCAAGAATCGCAA
114287 AACGGAAAAA
Statistics
Matches: 248, Mismatches: 15, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
59 4 0.02
60 224 0.90
61 8 0.03
62 12 0.05
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (60 bp):
AATCGCAACGCGATTCCAAGAATCGCAATGCGATTCCAAGAATCGCAATGCGATTCAAAG
Found at i:114402 original size:6 final size:6
Alignment explanation
Indices: 114391--114417 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
114381 CACGACTATT
114391 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
114418 CGAGACGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:115186 original size:6 final size:6
Alignment explanation
Indices: 115175--115231 Score: 114
Period size: 6 Copynumber: 9.5 Consensus size: 6
115165 TCTCGTCTCG
115175 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
115223 GGTCGT GGT
1 GGTCGT GGT
115232 AATACGTGTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:115367 original size:20 final size:20
Alignment explanation
Indices: 115342--115471 Score: 138
Period size: 20 Copynumber: 6.4 Consensus size: 20
115332 TTTTGCCGTT
115342 TTGCGATTCTTGGAATCGCG
1 TTGCGATTCTTGGAATCGCG
** *
115362 TTGCGATT-TTCTCAATCGCA
1 TTGCGATTCTT-GGAATCGCG
*
115382 TTGCGATTCCTGGAATCGCG
1 TTGCGATTCTTGGAATCGCG
**
115402 TTGCGATT-TTCTCAATCGCG
1 TTGCGATTCTT-GGAATCGCG
* *
115422 TTGCGATTCTTTGAATCGCA
1 TTGCGATTCTTGGAATCGCG
115442 TTGCGATTCTTGGAAGATCGCG
1 TTGCGATTCTTGG-A-ATCGCG
115464 TTGCGATT
1 TTGCGATT
115472 TTCTTTTGAC
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
19 3 0.03
20 70 0.78
21 4 0.04
22 13 0.14
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (20 bp):
TTGCGATTCTTGGAATCGCG
Found at i:115389 original size:40 final size:40
Alignment explanation
Indices: 115342--115449 Score: 180
Period size: 40 Copynumber: 2.7 Consensus size: 40
115332 TTTTGCCGTT
115342 TTGCGATTCTTGGAATCGCGTTGCGATTTTCTCAATCGCA
1 TTGCGATTCTTGGAATCGCGTTGCGATTTTCTCAATCGCA
* *
115382 TTGCGATTCCTGGAATCGCGTTGCGATTTTCTCAATCGCG
1 TTGCGATTCTTGGAATCGCGTTGCGATTTTCTCAATCGCA
* *
115422 TTGCGATTCTTTGAATCGCATTGCGATT
1 TTGCGATTCTTGGAATCGCGTTGCGATT
115450 CTTGGAAGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (40 bp):
TTGCGATTCTTGGAATCGCGTTGCGATTTTCTCAATCGCA
Found at i:115439 original size:60 final size:62
Alignment explanation
Indices: 115355--115475 Score: 194
Period size: 60 Copynumber: 2.0 Consensus size: 62
115345 CGATTCTTGG
115355 AATCGCGTTGCGATTTTCTCAATCGCATTGCGATTCCTGG-A-ATCGCGTTGCGATTTTCTC
1 AATCGCGTTGCGATTTTCTCAATCGCATTGCGATTCCTGGAAGATCGCGTTGCGATTTTCTC
* *
115415 AATCGCGTTGCGATTCTT-TGAATCGCATTGCGATTCTTGGAAGATCGCGTTGCGATTTTCT
1 AATCGCGTTGCGATT-TTCTCAATCGCATTGCGATTCCTGGAAGATCGCGTTGCGATTTTCT
115476 TTTGACCGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
60 35 0.62
61 3 0.05
62 18 0.32
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.37
Consensus pattern (62 bp):
AATCGCGTTGCGATTTTCTCAATCGCATTGCGATTCCTGGAAGATCGCGTTGCGATTTTCTC
Found at i:115527 original size:20 final size:19
Alignment explanation
Indices: 115355--115533 Score: 121
Period size: 20 Copynumber: 8.9 Consensus size: 19
115345 CGATTCTTGG
115355 AATCGCGTTGCGATTTTCT
1 AATCGCGTTGCGATTTTCT
* *
115374 CAATCGCATTGCGA-TTCCT
1 -AATCGCGTTGCGATTTTCT
115393 GGAATCGCGTTGCGATTTTCT
1 --AATCGCGTTGCGATTTTCT
115414 CAATCGCGTTGCGATTCTT-T
1 -AATCGCGTTGCGATT-TTCT
* **
115434 GAATCGCATTGCGATTCTTGGA
1 -AATCGCGTTGCGATT-TT-CT
115456 AGATCGCGTTGCGATTTTCT
1 A-ATCGCGTTGCGATTTTCT
* *
115476 -TTTGACCGTTGCGATTTTCT
1 AATCG--CGTTGCGATTTTCT
** * *
115496 TTTCAACATTGCGATTTTCT
1 AATC-GCGTTGCGATTTTCT
115516 AAATCGCGTTGCGATTTT
1 -AATCGCGTTGCGATTTT
115534 TGTTTCGCAT
Statistics
Matches: 127, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
18 2 0.02
19 4 0.03
20 95 0.75
21 13 0.10
22 13 0.10
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (19 bp):
AATCGCGTTGCGATTTTCT
Found at i:121226 original size:14 final size:13
Alignment explanation
Indices: 121182--121252 Score: 58
Period size: 14 Copynumber: 5.5 Consensus size: 13
121172 AGTATTATAT
*
121182 AAATATATATAATA
1 AAATA-ATATACTA
*
121196 AAGTAATATA-TA
1 AAATAATATACTA
*
121208 TAATAATATACGTA
1 AAATAATATAC-TA
121222 AAATAA-ATAC-A
1 AAATAATATACTA
*
121233 TAATAATATACATA
1 AAATAATATAC-TA
121247 AAATAA
1 AAATAA
121253 ATGTGTAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 6 0.13
12 14 0.30
13 9 0.20
14 17 0.37
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (13 bp):
AAATAATATACTA
Found at i:121262 original size:25 final size:25
Alignment explanation
Indices: 121183--121254 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
121173 GTATTATATA
* *
121183 AATATATATA-ATAAAGTAATATATAT
1 AATA-ATATACATAAAATAA-ATACAT
*
121209 AATAATATACGTAAAATAAATACAT
1 AATAATATACATAAAATAAATACAT
121234 AATAATATACATAAAATAAAT
1 AATAATATACATAAAATAAAT
121255 GTGTAATACA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 30 0.73
26 11 0.27
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (25 bp):
AATAATATACATAAAATAAATACAT
Found at i:123234 original size:105 final size:105
Alignment explanation
Indices: 123098--123961 Score: 1559
Period size: 105 Copynumber: 8.2 Consensus size: 105
123088 TTTGTCGGAT
* ** * *
123098 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTCGATTCACCTCCTTCTGGGGTGAATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
* *
123163 GGAACAGGCTATTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
* *
123203 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGTTCACCTCCTTCTGCGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
* * *
123268 GGAACAGGCTCTTCTCATTACGAACCCTCTCTTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123308 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
*
123373 GGAACATGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123413 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
123478 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123518 GAGTT-TTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
*
123582 GGAACAGGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123622 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
123687 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123727 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
* *
123792 GGAACAAGTTTTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
*
123832 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGAATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
*
123897 GGAACAAGTTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
123937 GAGTTCTTCTCATTATGAACTCTTC
1 GAGTTCTTCTCATTATGAACTCTTC
123962 ATTTGAAATA
Statistics
Matches: 739, Mismatches: 19, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
104 103 0.14
105 636 0.86
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (105 bp):
GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
Found at i:123882 original size:419 final size:420
Alignment explanation
Indices: 123098--123961 Score: 1577
Period size: 419 Copynumber: 2.1 Consensus size: 420
123088 TTTGTCGGAT
*
123098 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTCGATTCACCTCCTTCTGGGGTGAATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTCGAGTCACCTCCTTCTGGGGTGAATTTGAAA
123163 GGAACAGGCTATTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTC
66 GGAACAGGCTATTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTC
* *
123228 TGGAAATGTTGGTTCACCTCCTTCTGCGGTGGATTTGAAAGGAACAGGCTCTTCTCATTACGAAC
131 TGGAAATGTTGGGTCACCTCCTTCTGCGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAAC
*
123293 CCTCTCTTTTAGGACGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCT
196 CCTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCT
*
123358 GTGGTGGATTTGAAAGGAACATGCTCTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCT
261 GTGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCT
*
123423 CATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAAGGAACAAGCT
326 CATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGAATTTGAAAGGAACAAGCT
123488 CTTCTCATTACGAACCTTCTCCTTTAGGAC
391 CTTCTCATTACGAACCTTCTCCTTTAGGAC
* * * *
123518 GAGTT-TTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAA
1 GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTCGAGTCACCTCCTTCTGGGGTGAATTTGAAA
*
123582 GGAACAGGCTCTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTC
66 GGAACAGGCTATTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTC
*
123647 TGGAAATGTTGGGTCACCTCCTTCTGTGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAAC
131 TGGAAATGTTGGGTCACCTCCTTCTGCGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAAC
*
123712 CTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCT
196 CCTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCT
* *
123777 GTGGTGGATTTGAAAGGAACAAGTTTTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCT
261 GTGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCT
*
123842 CATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGAATTTGAAAGGAACAAGTT
326 CATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGAATTTGAAAGGAACAAGCT
123907 CTTCTCATTACGAACCTTCTCCTTTAGGAC
391 CTTCTCATTACGAACCTTCTCCTTTAGGAC
123937 GAGTTCTTCTCATTATGAACTCTTC
1 GAGTTCTTCTCATTATGAACTCTTC
123962 ATTTGAAATA
Statistics
Matches: 427, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
419 403 0.94
420 24 0.06
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (420 bp):
GAGTTCTTCTCATTATGAACTCTTCTGGAAATGTCGAGTCACCTCCTTCTGGGGTGAATTTGAAA
GGAACAGGCTATTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTC
TGGAAATGTTGGGTCACCTCCTTCTGCGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAAC
CCTCTCCTTTAGGACGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCT
GTGGTGGATTTGAAAGGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGACGAGTTCTTCT
CATTATGAACTCTTCTGGAAATGTTGGGTCACCTCCTTCTGTGGTGAATTTGAAAGGAACAAGCT
CTTCTCATTACGAACCTTCTCCTTTAGGAC
Found at i:124832 original size:54 final size:55
Alignment explanation
Indices: 124761--125342 Score: 659
Period size: 54 Copynumber: 10.7 Consensus size: 55
124751 AAAGTTTTAA
* ** * * * * *
124761 AAAAAATCAAGAAACCCCTGAAAACCAGGCTTAATTTCTTTGACAA-TTCATTTG
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
** * * * * * *
124815 AAAACATCAAGAAACCCCTAAAAATTAGGCTTAATTTCTTTG-AACGTTCATTTG
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
* *
124869 AGAAAAATCAAGAAACTT-TCGAAAATCAGACTTAGTTTCTTT-AAAA-CACATTTG
1 A-AAACATCAAGAAACTTCT-GAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
* * *
124923 AAAAGCGTCAAGAAACTTCTAAAAATCAGACTTAGTTTCTTT-AAAAACTCATTTG
1 AAAA-CATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
* * * *
124978 AAATCATCATGAAACTTCTGAAAATCAGACTTAGTTTCGTTGAAAA-CTTATTTG
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
* * *
125032 AAATCATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTT-AAAACCTCACTTG
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
* *
125086 AAAATCGTCAAGAAACTTCTGAAAATAAGACTTAGTTTCTTT-AAAAGCTCATTTG
1 AAAA-CATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
*** *
125141 AAATTGTCAAGAAACTTCTGAAAATCAGACTTAATTTCTTTG-AAAGCTCATTTG
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
*** *
125195 AAATTGTCAAGAAACTTCTGAAAATCAGACTTAATTTCTTTG-AAAGCTCATTT-
1 AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
*
125248 AAAATCATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTT-AAAAGCTCATTTA
1 AAAA-CATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
*
125303 AAAATCATCAAGAAACTTCTGAAGATCAGACTTAGTTTCT
1 AAAA-CATCAAGAAACTTCTGAAAATCAGACTTAGTTTCT
125343 AAAAAAACAC
Statistics
Matches: 470, Mismatches: 44, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
53 11 0.02
54 323 0.69
55 136 0.29
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (55 bp):
AAAACATCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAAGCTCATTTG
Found at i:125153 original size:217 final size:217
Alignment explanation
Indices: 124766--125342 Score: 725
Period size: 217 Copynumber: 2.7 Consensus size: 217
124756 TTTAAAAAAA
** * * * * *
124766 ATCAAGAAACCCCTGAAAACCAGGCTTAATTTCTTTGACAATTCATTTGAAAA-CATCAAGAAAC
1 ATCAAGAAACTTCTGAAAATCAGACTTAATTTCGTTGAAAACTCATTT-AAAATCATCAAGAAAC
** * * * * * * *
124830 CCCTAAAAATTAGGCTTAATTTCTTT-GAACGTTCATTTGAGAAAA--ATCAAGAAACTT-TCGA
65 TTCTGAAAATCAGACTTAGTTTCTTTAAAAC-CTCACTT-A-AAAATCATCAAGAAACTTCT-GA
124891 AAATCAGACTTAGTTTCTTTAAAACACATTTGAAAAGCGTCAAGAAACTTCTAAAAATCAGACTT
126 AAATCAGACTTAGTTTCTTTAAAACACATTTGAAAAGCGTCAAGAAACTTCTAAAAATCAGACTT
*
124956 AGTTTCTTTAAAAACTCATTTGAAATC
191 AATTTCTTTAAAAACTCATTTGAAATC
* * * *
124983 ATCATGAAACTTCTGAAAATCAGACTTAGTTTCGTTGAAAACTTATTTGAAATCATCAAGAAACT
1 ATCAAGAAACTTCTGAAAATCAGACTTAATTTCGTTGAAAACTCATTTAAAATCATCAAGAAACT
* * *
125048 TCTGAAAATCAGACTTAGTTTCTTTAAAACCTCACTTGAAAATCGTCAAGAAACTTCTGAAAATA
66 TCTGAAAATCAGACTTAGTTTCTTTAAAACCTCACTTAAAAATCATCAAGAAACTTCTGAAAATC
* ** *
125113 AGACTTAGTTTCTTTAAAAGCTCATTTG-AAATTGTCAAGAAACTTCTGAAAATCAGACTTAATT
131 AGACTTAGTTTCTTTAAAA-CACATTTGAAAAGCGTCAAGAAACTTCTAAAAATCAGACTTAATT
* * *
125177 TCTTTGAAAGCTCATTTGAAATT
195 TCTTTAAAAACTCATTTGAAATC
* * *
125200 GTCAAGAAACTTCTGAAAATCAGACTTAATTTCTTTGAAAGCTCATTTAAAATCATCAAGAAACT
1 ATCAAGAAACTTCTGAAAATCAGACTTAATTTCGTTGAAAACTCATTTAAAATCATCAAGAAACT
* * *
125265 TCTGAAAATCAGACTTAGTTTCTTTAAAAGCTCATTTAAAAATCATCAAGAAACTTCTGAAGATC
66 TCTGAAAATCAGACTTAGTTTCTTTAAAACCTCACTTAAAAATCATCAAGAAACTTCTGAAAATC
125330 AGACTTAGTTTCT
131 AGACTTAGTTTCT
125343 AAAAAAACAC
Statistics
Matches: 310, Mismatches: 44, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
215 4 0.01
216 3 0.01
217 292 0.94
218 11 0.04
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (217 bp):
ATCAAGAAACTTCTGAAAATCAGACTTAATTTCGTTGAAAACTCATTTAAAATCATCAAGAAACT
TCTGAAAATCAGACTTAGTTTCTTTAAAACCTCACTTAAAAATCATCAAGAAACTTCTGAAAATC
AGACTTAGTTTCTTTAAAACACATTTGAAAAGCGTCAAGAAACTTCTAAAAATCAGACTTAATTT
CTTTAAAAACTCATTTGAAATC
Found at i:127336 original size:18 final size:18
Alignment explanation
Indices: 127315--127351 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
127305 CCATTTCTTT
127315 TTTTTAATCTATTTTTTC
1 TTTTTAATCTATTTTTTC
**
127333 TTTTTCTTCTATTTTTTC
1 TTTTTAATCTATTTTTTC
127351 T
1 T
127352 CTTTCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTAATCTATTTTTTC
Found at i:127348 original size:12 final size:11
Alignment explanation
Indices: 127333--127429 Score: 74
Period size: 12 Copynumber: 8.5 Consensus size: 11
127323 CTATTTTTTC
127333 TTTTTCTTCTAT
1 TTTTTCTTCT-T
127345 TTTTTC-TCTT
1 TTTTTCTTCTT
127355 TCTTTT-TTCTCT
1 T-TTTTCTTCT-T
*
127367 TTCTTTTTTCTGT
1 TT-TTTCTTCT-T
*
127380 TTTTT-TTCTG
1 TTTTTCTTCTT
* *
127390 TGTTTCTTTTT
1 TTTTTCTTCTT
127401 TTTTTCTTTCTT
1 TTTTTC-TTCTT
127413 TTTTTCTTTCTT
1 TTTTTC-TTCTT
127425 TTTTT
1 TTTTT
127430 GTGTTTTTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
10 6 0.08
11 23 0.32
12 35 0.49
13 7 0.10
ACGTcount: A:0.01, C:0.15, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:127349 original size:13 final size:12
Alignment explanation
Indices: 127333--127429 Score: 64
Period size: 11 Copynumber: 8.3 Consensus size: 12
127323 CTATTTTTTC
*
127333 TTTTTCTTCTAT
1 TTTTTCTTCTTT
127345 TTTTTC-TCTTT
1 TTTTTCTTCTTT
127356 CTTTTT-TCTCTTT
1 -TTTTTCT-TCTTT
* *
127369 CTTTT-TTCTGT
1 TTTTTCTTCTTT
*
127380 TTTTT-TTC-TG
1 TTTTTCTTCTTT
*
127390 TGTTTCTT-TTT
1 TTTTTCTTCTTT
127401 TTTTTCTT-TCTT
1 TTTTTCTTCT-TT
127413 TTTTTCTTTCTTT
1 TTTTTC-TTCTTT
127426 TTTT
1 TTTT
127430 GTGTTTTTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
10 4 0.06
11 26 0.38
12 24 0.35
13 13 0.19
14 1 0.01
ACGTcount: A:0.01, C:0.15, G:0.03, T:0.80
Consensus pattern (12 bp):
TTTTTCTTCTTT
Found at i:127356 original size:18 final size:18
Alignment explanation
Indices: 127322--127358 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
127312 TTTTTTTTAA
*
127322 TCTATTTTTTCTTTTTCT
1 TCTATTTTTTCTCTTTCT
127340 TCTATTTTTTCTCTTTCT
1 TCTATTTTTTCTCTTTCT
127358 T
1 T
127359 TTTTCTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (18 bp):
TCTATTTTTTCTCTTTCT
Found at i:127360 original size:11 final size:11
Alignment explanation
Indices: 127345--127428 Score: 77
Period size: 11 Copynumber: 7.5 Consensus size: 11
127335 TTTCTTCTAT
127345 TTTTTCTCTTTC
1 TTTTT-TCTTTC
127357 TTTTTTC--TC
1 TTTTTTCTTTC
127366 TTTCTTT-TTTC
1 TTT-TTTCTTTC
127377 TGTTTTT-TTTC
1 T-TTTTTCTTTC
* *
127388 TGTGTTTCTTTT
1 T-TTTTTCTTTC
127400 TTTTTTCTTTC
1 TTTTTTCTTTC
127411 TTTTTTTCTTTC
1 -TTTTTTCTTTC
127423 TTTTTT
1 TTTTTT
127429 TGTGTTTTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 13
0.78 0.05 0.16
Matches are distributed among these distances:
9 5 0.08
10 3 0.05
11 32 0.52
12 22 0.35
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:127371 original size:4 final size:4
Alignment explanation
Indices: 127351--127425 Score: 59
Period size: 4 Copynumber: 19.2 Consensus size: 4
127341 CTATTTTTTC
* * *
127351 TCTT TCTT TTTT CTCTT TCTT T-TT TCTGT T-TT T-TT TCTG TGTT TCTT
1 TCTT TCTT TCTT -TCTT TCTT TCTT TCT-T TCTT TCTT TCTT TCTT TCTT
* *
127398 T-TT TTTT TCTT TCTT TTTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
127426 TTTTGTGTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
3 11 0.19
4 41 0.72
5 5 0.09
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (4 bp):
TCTT
Found at i:127405 original size:23 final size:23
Alignment explanation
Indices: 127351--127429 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
127341 CTATTTTTTC
* *
127351 TCTTTCTTTTTTCTCTTTCTTT-TT
1 TCTTT-TTTTTT-TCTGTGTTTCTT
*
127375 TCTGTTTTTTTTCTGTGTTTCTT
1 TCTTTTTTTTTTCTGTGTTTCTT
* *
127398 T-TTTTTTTCTTTCTTTTTTTCTT
1 TCTTTTTTT-TTTCTGTGTTTCTT
127421 TCTTTTTTT
1 TCTTTTTTT
127430 GTGTTTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
22 13 0.28
23 22 0.48
24 11 0.24
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (23 bp):
TCTTTTTTTTTTCTGTGTTTCTT
Found at i:127414 original size:41 final size:43
Alignment explanation
Indices: 127351--127435 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 43
127341 CTATTTTTTC
127351 TCTTTCTTTTTTCTC-TTTCTTTTTTCTGTT-TTTTTTCTGTGTT
1 TCTTTCTTTTTTCTCTTTTCTTTTTTCT-TTCTTTTTT-TGTGTT
127394 TCTTT-TTTTTT-TC-TTTCTTTTTTTCTTTCTTTTTTTGTGTT
1 TCTTTCTTTTTTCTCTTTTC-TTTTTTCTTTCTTTTTTTGTGTT
127435 T
1 T
127436 TTTATATATC
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
41 15 0.38
42 20 0.50
43 5 0.12
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (43 bp):
TCTTTCTTTTTTCTCTTTTCTTTTTTCTTTCTTTTTTTGTGTT
Found at i:127455 original size:54 final size:53
Alignment explanation
Indices: 127339--127461 Score: 142
Period size: 54 Copynumber: 2.3 Consensus size: 53
127329 TTTCTTTTTC
* *
127339 TTCTATTTTTTCTCTTTCTTTTTTCTCTTTCTTTTTTCTGTTTTTTTTCTGTGT
1 TTCT-TTTTTTCTCTTTCTTTTTTCTCTTTCTTTTTTCTGTTTTTTTTATATGT
* *
127393 TTCTTTTTTTTTTCTTTCTTTTTT-TCTTTCTTTTTT-TGTGTTTTTTATATATCTT
1 TTC-TTTTTTTCTCTTTCTTTTTTCTCTTTCTTTTTTCTGT-TTTTTT-TATAT-GT
*
127448 TTCTTTTTCTCTCT
1 TTCTTTTTTTCTCT
127462 ATGTTGTCAA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
52 3 0.05
53 18 0.31
54 33 0.56
55 5 0.08
ACGTcount: A:0.03, C:0.15, G:0.04, T:0.77
Consensus pattern (53 bp):
TTCTTTTTTTCTCTTTCTTTTTTCTCTTTCTTTTTTCTGTTTTTTTTATATGT
Found at i:128847 original size:21 final size:23
Alignment explanation
Indices: 128806--128856 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
128796 ATGCACATGC
128806 AAATG-AAAAGATACAAAAATGG
1 AAATGCAAAAGATACAAAAATGG
* *
128828 GAATGCAAAA-ATAC-AAAATGT
1 AAATGCAAAAGATACAAAAATGG
128849 AAATGCAA
1 AAATGCAA
128857 CAAAGGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 13 0.52
22 8 0.32
23 4 0.16
ACGTcount: A:0.61, C:0.08, G:0.16, T:0.16
Consensus pattern (23 bp):
AAATGCAAAAGATACAAAAATGG
Found at i:131578 original size:14 final size:13
Alignment explanation
Indices: 131534--131604 Score: 58
Period size: 14 Copynumber: 5.5 Consensus size: 13
131524 AGTATTATAT
*
131534 AAATATATATAATA
1 AAATA-ATATACTA
*
131548 AAGTAATATA-TA
1 AAATAATATACTA
*
131560 TAATAATATACGTA
1 AAATAATATAC-TA
131574 AAATAA-ATAC-A
1 AAATAATATACTA
*
131585 TAATAATATACATA
1 AAATAATATAC-TA
131599 AAATAA
1 AAATAA
131605 ATGTGTAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 6 0.13
12 14 0.30
13 9 0.20
14 17 0.37
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (13 bp):
AAATAATATACTA
Found at i:131614 original size:25 final size:25
Alignment explanation
Indices: 131535--131606 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
131525 GTATTATATA
* *
131535 AATATATATA-ATAAAGTAATATATAT
1 AATA-ATATACATAAAATAA-ATACAT
*
131561 AATAATATACGTAAAATAAATACAT
1 AATAATATACATAAAATAAATACAT
131586 AATAATATACATAAAATAAAT
1 AATAATATACATAAAATAAAT
131607 GTGTAATACA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 30 0.73
26 11 0.27
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (25 bp):
AATAATATACATAAAATAAATACAT
Found at i:137848 original size:3 final size:3
Alignment explanation
Indices: 137840--137963 Score: 176
Period size: 3 Copynumber: 40.7 Consensus size: 3
137830 TTTATCCATT
* * * *
137840 TTA TTA TTA TTA TTA TTA ATA TTA ATA TTA TTA TTA TCA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
137888 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
137934 ATA TTA TATA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
137964 TAATAAATAA
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
3 102 0.95
4 5 0.05
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:138682 original size:13 final size:13
Alignment explanation
Indices: 138664--138692 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
138654 ACCACCGTTA
138664 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
138677 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
138690 CGG
1 CGG
138693 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Found at i:139282 original size:19 final size:19
Alignment explanation
Indices: 139244--139279 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
139234 CAATTTAGTC
139244 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
139263 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
139280 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:139354 original size:16 final size:15
Alignment explanation
Indices: 139333--139365 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
139323 AAATATTTTG
*
139333 ATATATAT-TCATAA
1 ATATATATATAATAA
139347 ATATATATATAATAA
1 ATATATATATAATAA
139362 ATAT
1 ATAT
139366 TAACTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATATATAATAA
Found at i:151115 original size:19 final size:20
Alignment explanation
Indices: 151082--151123 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
151072 TTTAAGTTCA
*
151082 ATTTATTGGAGATTCAATTT
1 ATTTATTGGAAATTCAATTT
151102 ATTT-TTGGAAATTCAATTT
1 ATTTATTGGAAATTCAATTT
151121 ATT
1 ATT
151124 CTTTTCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (20 bp):
ATTTATTGGAAATTCAATTT
Found at i:151757 original size:52 final size:52
Alignment explanation
Indices: 151679--152929 Score: 2258
Period size: 52 Copynumber: 24.1 Consensus size: 52
151669 TATGTGCTCA
151679 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
151731 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
151783 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
*
151835 ATAGCATCTTCTGGAAGTGTTTTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
151887 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
*
151939 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
151991 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
*
152043 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152095 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152147 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152199 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152251 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152303 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
*
152355 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
152407 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
152458 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
152509 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GAACAGAAC
152561 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GAACAGAAC
152613 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
152664 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGA-AGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
*
152715 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-AGACATAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGA-ACAGAAC
*
152767 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
*
152819 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
*
152871 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAATC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAA-C
152924 A-AGCAT
1 ATAGCAT
152930 TGAATTTAGA
Statistics
Matches: 1179, Mismatches: 11, Indels: 18
0.98 0.01 0.01
Matches are distributed among these distances:
50 1 0.00
51 202 0.17
52 973 0.83
53 3 0.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.37
Consensus pattern (52 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
Found at i:153744 original size:113 final size:113
Alignment explanation
Indices: 153546--154336 Score: 1366
Period size: 113 Copynumber: 7.0 Consensus size: 113
153536 TTTAGCAAAG
* * * *
153546 ACCTGAATCCATCATTTGGTGGATCAACATTACCAGAGAAGGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
153611 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
153659 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
153724 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
* * *
153772 ACCTGAATCCATCATTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
153837 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
153885 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
153950 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
153998 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154063 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
154111 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
* *
154176 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
*** * * * * * ** *
154224 GTTTAAATTCATCATTTGATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATC
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATC
* **
154289 TGAAGAAGGAAGAAGAAGTTCATAATGAGAGGAGCTTGTTCAACCTTT
65 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
154337 GTTTGATATC
Statistics
Matches: 651, Mismatches: 26, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
113 589 0.90
114 62 0.10
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (113 bp):
ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
Found at i:154640 original size:3 final size:3
Alignment explanation
Indices: 154632--154744 Score: 149
Period size: 3 Copynumber: 37.7 Consensus size: 3
154622 TTTATCCATT
* * *
154632 TTA TTA TTA TTA TTA TTA -TA TTA ATA TTA TTA TCA -TA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
154678 TTA TTA TTA TTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
154724 TATA TTA TTA TTA TTA TTA TT
1 T-TA TTA TTA TTA TTA TTA TT
154745 TAATAAATAA
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
2 3 0.03
3 88 0.92
4 5 0.05
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:155465 original size:13 final size:13
Alignment explanation
Indices: 155447--155475 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
155437 ACCACCGTTA
155447 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
155460 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
155473 CGG
1 CGG
155476 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Found at i:156066 original size:19 final size:19
Alignment explanation
Indices: 156028--156063 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
156018 CAATTTAGTC
156028 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
156047 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
156064 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:166394 original size:9 final size:9
Alignment explanation
Indices: 166382--166413 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
166372 TTTATATACA
166382 TTATTCTTC
1 TTATTCTTC
166391 TTATTCTTC
1 TTATTCTTC
*
166400 TTCTTCTTC
1 TTATTCTTC
166409 TTATT
1 TTATT
166414 ATTATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (9 bp):
TTATTCTTC
Found at i:166415 original size:3 final size:3
Alignment explanation
Indices: 166409--166447 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
166399 CTTCTTCTTC
166409 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
166448 CATGTTAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:168893 original size:42 final size:42
Alignment explanation
Indices: 168828--168935 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
168818 TGTGATTGAC
**
168828 CGATCTCACATGGC-ATCAAGCATGAATTAAAAAGGAGAATAT
1 CGATCTCACATAACAATCAAGCATGAATTAAAAAGGAGAA-AT
*
168870 -GATCTCACATAACAATCAAGCATGAATTATAAAGGAGAAAT
1 CGATCTCACATAACAATCAAGCATGAATTAAAAAGGAGAAAT
*
168911 CGATCTCAC--AACAATCAAACATGAA
1 CGATCTCACATAACAATCAAGCATGAA
168936 GGAGAACTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
40 15 0.25
41 13 0.22
42 32 0.53
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (42 bp):
CGATCTCACATAACAATCAAGCATGAATTAAAAAGGAGAAAT
Found at i:176818 original size:3 final size:3
Alignment explanation
Indices: 176812--176852 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
176802 CTTCTTCTTC
*
176812 TTA TTA TTA TTA -TA TTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
176853 CATGTTAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:179314 original size:42 final size:42
Alignment explanation
Indices: 179226--179332 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 42
179216 TGTGATTGAC
**
179226 CGATCTCACATGGC-ATCAAGCATGAATTAAAAGGAGAATAT
1 CGATCTCACATAACAATCAAGCATGAATTAAAAGGAGAATAT
179267 -GATCTCACATAACAATCAAGCATGAATTATAAAGGAGAA-AT
1 CGATCTCACATAACAATCAAGCATGAATTA-AAAGGAGAATAT
*
179308 CGATCTCAC--AACAATCAAACATGAA
1 CGATCTCACATAACAATCAAGCATGAA
179333 GGAGAACTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
40 26 0.43
41 17 0.28
42 17 0.28
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (42 bp):
CGATCTCACATAACAATCAAGCATGAATTAAAAGGAGAATAT
Found at i:179332 original size:40 final size:40
Alignment explanation
Indices: 179240--179332 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 40
179230 CTCACATGGC
179240 ATCAAGCATGAATTAAAAGGAGAATATGATCTCACATAACA
1 ATCAAGCATGAATTAAAAGGAGAATATGATCTCACA-AACA
179281 ATCAAGCATGAATTATAAAGGAGAA-ATCGATCTCAC-AACA
1 ATCAAGCATGAATTA-AAAGGAGAATAT-GATCTCACAAACA
*
179321 ATCAAACATGAA
1 ATCAAGCATGAA
179333 GGAGAACTCG
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
40 15 0.31
41 17 0.35
42 17 0.35
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.20
Consensus pattern (40 bp):
ATCAAGCATGAATTAAAAGGAGAATATGATCTCACAAACA
Found at i:187054 original size:3 final size:3
Alignment explanation
Indices: 187046--187452 Score: 398
Period size: 3 Copynumber: 142.3 Consensus size: 3
187036 TTTATATACA
*
187046 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
187094 TTC TCC TTC TTC TTC -TC TTC TTC TTC TTC TTC -TC TTC TTC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
187139 TTC TCC TTC -TC TTC TCC TTC -TC TTC TCTC TTC TTC -TC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC TTC
187181 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * *
187228 TTC -TC TTC -TC TTC TCC TTC -TC TTC -TC TTC TCC TTC TCC TTC TCCC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC
* *
187273 TTC TTT TTC -TC TTC -TC TTC TTTC TTC TCC TTC TT- TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC
* * * *
187316 -TC TTC -TC TTC TCC TT- TTC -TC TTC -TC TT- TTC TCC TTC TCC CTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * *
187358 TTC TTC -TC TTTC TTC TCC TTC TTC TTC TTC TT- TCC CTC TTC TCC
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
187402 TT- TCC TTC TTC TT- TCTC TTC TTC TTC TTC -TC TTC TCC TTC TTC
1 TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC TTC TTC TTC TTC TTC
187445 TCTC TTC T
1 T-TC TTC T
187453 C
Statistics
Matches: 332, Mismatches: 40, Indels: 64
0.76 0.09 0.15
Matches are distributed among these distances:
2 49 0.15
3 269 0.81
4 14 0.04
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TTC
Done.