genome.fa.s7042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007042.1 Hibiscus syriacus cultivar Beakdansim tig00018258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71805

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3063--3229	57	2.9	57	87	0	235	25	37	1	36	1.64
3111--3213	33	3.4	33	70	22	107	23	36	0	38	1.62
3128--3189	24	2.5	25	89	5	90	24	38	0	37	1.56
6370--6422	15	3.5	15	82	10	63	66	1	0	32	1.03
6372--6411	21	1.9	21	85	10	55	62	2	0	35	1.09
6380--6413	5	6.6	5	86	6	50	64	0	0	35	0.94
6380--6422	10	4.2	10	87	3	50	67	0	0	32	0.91
8937--8973	19	2.0	19	89	5	58	51	8	0	40	1.32
9157--9200	13	3.4	13	77	0	52	47	18	0	34	1.49
9153--9214	26	2.4	26	78	2	63	50	14	3	32	1.59
11876--12286	133	3.1	132	86	5	555	24	6	16	52	1.67
13267--13337	29	2.4	30	80	4	81	46	8	18	26	1.77
14969--15030	30	2.1	30	100	0	124	33	6	16	43	1.73
15356--15466	53	2.1	53	93	0	186	23	17	18	40	1.91
16504--16585	41	2.0	41	90	0	128	41	25	8	24	1.83
19078--19116	20	2.0	20	89	0	60	53	5	2	38	1.37
20253--20305	23	2.3	22	81	18	63	66	5	0	28	1.15
22577--23265	344	2.0	344	99	0	1360	37	17	19	25	1.94
25542--25598	18	3.2	18	89	0	87	19	47	19	14	1.82
25920--25966	20	2.3	20	96	0	85	21	19	14	44	1.86
26900--26949	26	1.9	26	83	0	64	38	18	20	24	1.93
27954--28007	12	4.5	12	77	9	56	14	18	20	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27950--28021	24	3.0	24	83	0	99	15	16	19	48	1.81
32622--32681	24	2.5	24	73	10	59	18	11	16	53	1.72
34730--34811	41	2.0	41	82	0	101	20	46	18	14	1.84
34741--34794	23	2.3	23	84	6	74	24	46	16	12	1.82
34764--34811	18	2.7	18	83	0	69	18	45	20	14	1.85
39396--39445	18	2.8	18	93	0	82	20	48	18	14	1.82
39411--39457	18	2.6	18	89	0	58	27	48	12	10	1.74
44307--44405	10	10.3	9	77	12	81	16	27	27	29	1.97
44308--44405	19	5.1	19	78	14	78	15	27	27	29	1.96
44306--44405	29	3.4	30	83	9	118	17	27	27	29	1.97
44402--44459	5	10.8	5	78	14	62	18	51	22	6	1.70
44402--44466	22	3.0	22	100	0	130	18	49	23	9	1.76
44456--44486	7	4.4	7	100	0	62	16	29	29	25	1.96
51648--51741	10	9.8	9	74	13	71	18	25	26	29	1.98
51650--51747	19	5.1	19	76	11	76	16	27	26	29	1.97
51647--51722	29	2.6	29	87	2	116	19	26	25	28	1.99
51669--51747	9	8.3	9	73	9	50	16	27	27	27	1.97
51744--51801	5	10.8	5	78	14	62	18	51	22	6	1.70
51744--51808	22	3.0	22	100	0	130	18	49	23	9	1.76
51798--51828	7	4.4	7	100	0	62	16	29	29	25	1.96
56542--56593	23	2.3	23	100	0	104	40	13	28	17	1.87
58869--58983	46	2.5	44	81	12	124	29	22	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58918--59059	75	1.9	74	82	7	180	31	21	21	25	1.98
60108--60409	117	2.6	117	86	2	412	32	33	16	18	1.93
61324--61444	29	4.1	28	80	6	116	42	21	4	31	1.74
61461--61497	18	2.1	18	90	5	58	10	21	45	21	1.82
66489--66793	115	2.6	116	86	4	402	32	32	16	19	1.93
67738--67864	29	4.4	29	86	5	170	40	21	6	32	1.78
67737--67864	57	2.2	57	87	5	186	39	21	6	32	1.78
67879--67963	18	4.9	18	78	17	76	9	21	48	21	1.78
67886--67963	23	3.2	23	81	16	102	7	20	50	21	1.73
67886--67947	5	11.2	5	77	19	61	6	19	53	20	1.67
67914--67973	28	2.1	28	81	0	66	13	21	43	21	1.87
68580--68632	22	2.5	22	88	8	76	37	11	18	32	1.87
69926--70149	73	3.0	74	80	4	247	29	20	16	33	1.95

Tables:   1

The End!