Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007043.1 Hibiscus syriacus cultivar Beakdansim tig00018259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64518
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Found at i:14520 original size:17 final size:17
Alignment explanation
Indices: 14498--14531 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14488 TATTTATTTC
*
14498 TTTCTTTTTTATTCTTT
1 TTTCTTCTTTATTCTTT
*
14515 TTTCTTCTTTGTTCTTT
1 TTTCTTCTTTATTCTTT
14532 CTTTAACCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTCTTCTTTATTCTTT
Found at i:23773 original size:21 final size:21
Alignment explanation
Indices: 23747--23791 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23737 GATTTCTGGG
* *
23747 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
23768 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
23789 CAA
1 CAA
23792 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:25514 original size:13 final size:13
Alignment explanation
Indices: 25496--25558 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
25486 TCTACGGGCA
25496 CTACGGTGCAATT
1 CTACGGTGCAATT
25509 CTACGG-GC-A--
1 CTACGGTGCAATT
25518 CTACGGTGCAATT
1 CTACGGTGCAATT
25531 CTACGG-GC-A--
1 CTACGGTGCAATT
*
25540 CTTCGGTGCAATT
1 CTACGGTGCAATT
25553 CTACGG
1 CTACGG
25559 GCACTTCGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
9 11 0.28
10 4 0.10
11 4 0.10
12 4 0.10
13 17 0.43
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (13 bp):
CTACGGTGCAATT
Found at i:25579 original size:22 final size:22
Alignment explanation
Indices: 25484--25571 Score: 158
Period size: 22 Copynumber: 4.0 Consensus size: 22
25474 TATGGACATC
25484 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTACGGTGCA
25506 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTACGGTGCA
*
25528 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTACGGTGCA
*
25550 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTACGGTGCA
25572 TTTATACGAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 65 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (22 bp):
ATTCTACGGGCACTACGGTGCA
Found at i:28645 original size:21 final size:21
Alignment explanation
Indices: 28619--28663 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
28609 GATTTCTGGG
* *
28619 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
28640 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
28661 CAA
1 CAA
28664 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:30393 original size:13 final size:13
Alignment explanation
Indices: 30375--30437 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
30365 TCTACGGGCA
30375 CTACGGTGCAATT
1 CTACGGTGCAATT
30388 CTACGG-GC-A--
1 CTACGGTGCAATT
30397 CTACGGTGCAATT
1 CTACGGTGCAATT
30410 CTACGG-GC-A--
1 CTACGGTGCAATT
*
30419 CTTCGGTGCAATT
1 CTACGGTGCAATT
30432 CTACGG
1 CTACGG
30438 GCACTTCGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
9 11 0.28
10 4 0.10
11 4 0.10
12 4 0.10
13 17 0.43
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (13 bp):
CTACGGTGCAATT
Found at i:30458 original size:22 final size:22
Alignment explanation
Indices: 30363--30450 Score: 158
Period size: 22 Copynumber: 4.0 Consensus size: 22
30353 TATGGACATC
30363 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTACGGTGCA
30385 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTACGGTGCA
*
30407 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTACGGTGCA
*
30429 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTACGGTGCA
30451 TTTATACGAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 65 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (22 bp):
ATTCTACGGGCACTACGGTGCA
Found at i:35035 original size:25 final size:25
Alignment explanation
Indices: 34988--35037 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
34978 ATTGTAAGAA
*
34988 ATATAATAAATTAAATTAATATTTT
1 ATATAATAAATTAAATGAATATTTT
* * *
35013 ATATGATAAATTTAATGACTATTTT
1 ATATAATAAATTAAATGAATATTTT
35038 GTAAAAATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (25 bp):
ATATAATAAATTAAATGAATATTTT
Found at i:35102 original size:21 final size:22
Alignment explanation
Indices: 35066--35108 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
35056 TAATGATAAT
*
35066 TTTATAATTGTTTAAAATTTTA
1 TTTATAATTGTTTAAAAATTTA
35088 TTTATAATT-TTTAAAAATTTA
1 TTTATAATTGTTTAAAAATTTA
35109 ATAATAATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTATAATTGTTTAAAAATTTA
Found at i:35115 original size:21 final size:22
Alignment explanation
Indices: 35069--35116 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
35059 TGATAATTTT
* * *
35069 ATAATTGTTTAAAATTTTATTT
1 ATAATTGTTTAAAAATTTAATA
35091 ATAATT-TTTAAAAATTTAATA
1 ATAATTGTTTAAAAATTTAATA
35112 ATAAT
1 ATAAT
35117 CCTATGAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATAATTGTTTAAAAATTTAATA
Found at i:41073 original size:39 final size:39
Alignment explanation
Indices: 41023--41277 Score: 384
Period size: 39 Copynumber: 6.5 Consensus size: 39
41013 CTCGGCGGAT
41023 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
* *
41062 GGTTCGTCTTCTCTGTAGCAGCTCCGTCATCTGCGGGCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
* * *
41101 GGTTCGGCTTCTCTGAAGTAGCTCCGTCATCTGCGGGTG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
*
41140 GGTTCGGCTTCTCTGTAGCAGCTCCGTCATCTGCGGGCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
* * * *
41179 GGTTCGTCTTCTCTGAAGAAGCTCCGTCATCTACGGGCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
** * *
41218 GGTTCGGCTTCTCTGGATTAGATCCGTCATCTGCGGGTG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
41257 GGTTCGGCTTCTCTGGAGCAG
1 GGTTCGGCTTCTCTGGAGCAG
41278 AGAGTGAATC
Statistics
Matches: 194, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 194 1.00
ACGTcount: A:0.10, C:0.28, G:0.33, T:0.29
Consensus pattern (39 bp):
GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCG
Found at i:41229 original size:117 final size:117
Alignment explanation
Indices: 41023--41277 Score: 447
Period size: 117 Copynumber: 2.2 Consensus size: 117
41013 CTCGGCGGAT
* *
41023 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCGGGTTCGTCTTCTCTGTAGCAGCTCCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCGGGTTCGTCTTCTCTGAAGAAGCTCCG
* *
41088 TCATCTGCGGGCGGGTTCGGCTTCTCTGAAGTAGCTCCGTCATCTGCGGGTG
66 TCATCTACGGGCGGGTTCGGCTTCTCTGAAGTAGATCCGTCATCTGCGGGTG
*
41140 GGTTCGGCTTCTCTGTAGCAGCTCCGTCATCTGCGGGCGGGTTCGTCTTCTCTGAAGAAGCTCCG
1 GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCGGGTTCGTCTTCTCTGAAGAAGCTCCG
* *
41205 TCATCTACGGGCGGGTTCGGCTTCTCTGGATTAGATCCGTCATCTGCGGGTG
66 TCATCTACGGGCGGGTTCGGCTTCTCTGAAGTAGATCCGTCATCTGCGGGTG
41257 GGTTCGGCTTCTCTGGAGCAG
1 GGTTCGGCTTCTCTGGAGCAG
41278 AGAGTGAATC
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 130 1.00
ACGTcount: A:0.10, C:0.28, G:0.33, T:0.29
Consensus pattern (117 bp):
GGTTCGGCTTCTCTGGAGCAGCTCCGTCATCTGCGGGCGGGTTCGTCTTCTCTGAAGAAGCTCCG
TCATCTACGGGCGGGTTCGGCTTCTCTGAAGTAGATCCGTCATCTGCGGGTG
Found at i:47027 original size:2 final size:2
Alignment explanation
Indices: 47020--47053 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
47010 AGAAAACTTA
47020 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47054 GTAAAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50956 original size:33 final size:33
Alignment explanation
Indices: 50914--50977 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
50904 ATACATTAGA
*
50914 TTTTTAGTTGCTCAACCGTTTTTCACTAACGCC
1 TTTTTAGTTGCTCAACCGCTTTTCACTAACGCC
50947 TTTTTAGTTGCTCAACCGCTTTTCACTAACG
1 TTTTTAGTTGCTCAACCGCTTTTCACTAACG
50978 GCGTTATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (33 bp):
TTTTTAGTTGCTCAACCGCTTTTCACTAACGCC
Found at i:51252 original size:32 final size:32
Alignment explanation
Indices: 51190--51270 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 32
51180 TCGGTTCAGA
*
51190 TCAATATCAAATCGGTT-GATTTTGGATCGGG
1 TCAATATCAGATCGGTTAGATTTTGGATCGGG
* *
51221 TTAATATCAGATCGGTTAGATTTTGGGTCGGG
1 TCAATATCAGATCGGTTAGATTTTGGATCGGG
**
51253 TCAATATTGGATCGGTTA
1 TCAATATCAGATCGGTTA
51271 CTAGTTTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 15 0.35
32 28 0.65
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (32 bp):
TCAATATCAGATCGGTTAGATTTTGGATCGGG
Found at i:51689 original size:19 final size:19
Alignment explanation
Indices: 51667--51736 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
51657 ATAAATCTAA
51667 TATTATTTTATTTGTTTTC
1 TATTATTTTATTTGTTTTC
* * **
51686 TATTATTTTTATTATAAATCTAA
1 TATTA-TTTTATT-T--GTTTTC
*
51709 TATTATTTTCTTTGTTTTC
1 TATTATTTTATTTGTTTTC
51728 TATTATTTT
1 TATTATTTT
51737 TATTATAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 8
0.69 0.16 0.15
Matches are distributed among these distances:
19 16 0.42
20 7 0.18
21 2 0.05
22 6 0.16
23 7 0.18
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.69
Consensus pattern (19 bp):
TATTATTTTATTTGTTTTC
Found at i:51691 original size:42 final size:42
Alignment explanation
Indices: 51644--51754 Score: 213
Period size: 42 Copynumber: 2.6 Consensus size: 42
51634 GGAAACTTTA
51644 TATTATTTTTATTATAAATCTAATATTATTTTATTTGTTTTC
1 TATTATTTTTATTATAAATCTAATATTATTTTATTTGTTTTC
*
51686 TATTATTTTTATTATAAATCTAATATTATTTTCTTTGTTTTC
1 TATTATTTTTATTATAAATCTAATATTATTTTATTTGTTTTC
51728 TATTATTTTTATTATAAATCTAATATT
1 TATTATTTTTATTATAAATCTAATATT
51755 TTTATAACAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (42 bp):
TATTATTTTTATTATAAATCTAATATTATTTTATTTGTTTTC
Found at i:51897 original size:18 final size:19
Alignment explanation
Indices: 51847--51898 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
51837 AACTTACTAT
51847 TATTTTATTATAAA-TATAA
1 TATTTTATT-TAAATTATAA
* *
51866 TATTTTA-ATAAATTATCA
1 TATTTTATTTAAATTATAA
51884 -ATTTTATTTAAATTA
1 TATTTTATTTAAATTA
51899 ATTCAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 10 0.36
18 11 0.39
19 7 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTTATTTAAATTATAA
Found at i:51993 original size:32 final size:32
Alignment explanation
Indices: 51957--52025 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
51947 CAATTTGTTT
* * *
51957 GGGTTGCTTTTGGGTCGGGTTAGATTCGATTC
1 GGGTTCCTTTCGGGTCGGGTTACATTCGATTC
* *
51989 GGGTTCCTTTCGGGTCGGGTTTCTTTCGATTC
1 GGGTTCCTTTCGGGTCGGGTTACATTCGATTC
52021 GGGTT
1 GGGTT
52026 AATTTCGGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.06, C:0.16, G:0.36, T:0.42
Consensus pattern (32 bp):
GGGTTCCTTTCGGGTCGGGTTACATTCGATTC
Found at i:52031 original size:16 final size:16
Alignment explanation
Indices: 51971--52048 Score: 68
Period size: 16 Copynumber: 4.9 Consensus size: 16
51961 TGCTTTTGGG
51971 TCGGGTTAGA-TTCGAT
1 TCGGGTTA-ATTTCGAT
** **
51987 TCGGGTTCCTTTCGGG
1 TCGGGTTAATTTCGAT
**
52003 TCGGGTTTCTTTCGAT
1 TCGGGTTAATTTCGAT
*
52019 TCGGGTTAATTTCGGT
1 TCGGGTTAATTTCGAT
*
52035 TCAGGTTAATTTCG
1 TCGGGTTAATTTCG
52049 CTTCATGATG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.42
Consensus pattern (16 bp):
TCGGGTTAATTTCGAT
Found at i:52048 original size:32 final size:32
Alignment explanation
Indices: 51968--52048 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 32
51958 GGTTGCTTTT
* **
51968 GGGTCGGGTTAGA-TTCGATTCGGGTTCCTTTC
1 GGGTCAGGTTA-ATTTCGATTCGGGTTAATTTC
* **
52000 GGGTCGGGTTTCTTTCGATTCGGGTTAATTTC
1 GGGTCAGGTTAATTTCGATTCGGGTTAATTTC
*
52032 GGTTCAGGTTAATTTCG
1 GGGTCAGGTTAATTTCG
52049 CTTCATGATG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.11, C:0.16, G:0.32, T:0.41
Consensus pattern (32 bp):
GGGTCAGGTTAATTTCGATTCGGGTTAATTTC
Found at i:52053 original size:16 final size:16
Alignment explanation
Indices: 52012--52053 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
52002 GTCGGGTTTC
*
52012 TTTCGATTCGGGTTAA
1 TTTCGATTCAGGTTAA
*
52028 TTTCGGTTCAGGTTAA
1 TTTCGATTCAGGTTAA
*
52044 TTTCGCTTCA
1 TTTCGATTCA
52054 TGATGATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (16 bp):
TTTCGATTCAGGTTAA
Found at i:52627 original size:31 final size:31
Alignment explanation
Indices: 52587--52661 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
52577 CTTTAACGCA
* *
52587 TTTAGTACCTAAACTAT-CAATTTTAA-TCTAT
1 TTTAATACCTAAACT-TCCAAATTTAATTC-AT
*
52618 TTTAATACCTAAACTTCCAAATTTGATTCAT
1 TTTAATACCTAAACTTCCAAATTTAATTCAT
52649 TTTAATACCTAAA
1 TTTAATACCTAAA
52662 TTTCAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
30 1 0.03
31 36 0.92
32 2 0.05
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (31 bp):
TTTAATACCTAAACTTCCAAATTTAATTCAT
Found at i:55752 original size:2 final size:2
Alignment explanation
Indices: 55745--55811 Score: 125
Period size: 2 Copynumber: 33.5 Consensus size: 2
55735 TTTGATTTGA
55745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
55787 AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
55812 AAGATATAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:59679 original size:2 final size:2
Alignment explanation
Indices: 59674--59698 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
59664 TACATTTACT
59674 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
59699 TAAAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63006 original size:61 final size:61
Alignment explanation
Indices: 62919--63034 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 61
62909 GATGAGATAC
* * * *
62919 TAGATTCTTTAACCGAGGTCATAGATTTGAATCTCGCAGTTAGTCTAATGGGATGAGGTTT
1 TAGATTCCTTAACCGAGGTCAAAGATTTAAATCTCACAGTTAGTCTAATGGGATGAGGTTT
** * *
62980 TAGATTCCTTAATTGAGGTCAAAGATTTAAATTTTACAGTTAGTCTAATGGGATG
1 TAGATTCCTTAACCGAGGTCAAAGATTTAAATCTCACAGTTAGTCTAATGGGATG
63035 GTGTGCTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.37
Consensus pattern (61 bp):
TAGATTCCTTAACCGAGGTCAAAGATTTAAATCTCACAGTTAGTCTAATGGGATGAGGTTT
Done.