Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007044.1 Hibiscus syriacus cultivar Beakdansim tig00018262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77038

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5177--5205
3
9.7
3
100
0
58
34
65
0
0
0.93
5875--6113
116
2.1
115
85
4
320
37
25
12
24
1.90
8811--8852
19
2.2
19
86
0
57
38
21
7
33
1.81
8825--8863
19
2.1
19
85
9
53
38
23
2
35
1.68
11544--11679
45
3.0
46
92
2
229
36
13
7
42
1.72
16034--16135
51
2.0
51
96
0
186
44
10
21
23
1.84
18199--18238
21
1.9
21
89
0
62
40
27
10
22
1.86
20174--20435
130
2.0
130
100
0
524
30
14
22
33
1.93
26930--26998
36
1.9
36
100
0
138
39
10
5
44
1.62
32474--32586
57
1.9
59
91
5
185
52
7
15
24
1.69
42643--42674
2
16.5
2
93
6
57
50
0
0
50
1.00
43848--43924
40
1.9
41
97
2
147
24
3
12
58
1.52
49057--49090
16
2.1
17
88
5
52
35
0
0
64
0.94
49917--49957
16
2.6
16
88
3
57
36
12
21
29
1.90
55955--55986
14
2.3
14
100
0
64
62
0
6
31
1.20
58284--58313
2
15.0
2
100
0
60
50
0
0
50
1.00
62404--62444
17
2.4
17
95
0
73
17
41
14
26
1.88
63595--63766
85
2.0
85
97
0
326
27
20
16
35
1.94
64551--64587
18
2.1
18
85
14
51
37
0
13
48
1.43
69337--69378
11
3.8
11
78
12
50
26
2
0
71
0.98
69336--69378
16
2.6
17
81
7
61
27
2
0
69
1.00
69419--69447
15
1.9
15
100
0
58
34
0
6
58
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69441--69471
16
1.9
16
100
0
62
38
3
19
38
1.68
69457--69551
45
2.1
45
92
0
154
43
1
8
47
1.40
69511--69649
24
5.8
25
73
19
71
44
2
7
45
1.45
69479--69552
21
3.4
21
76
10
85
43
0
6
50
1.29
69479--69568
21
4.1
22
73
12
60
42
1
7
48
1.39
69408--69586
59
3.0
60
77
9
195
40
1
9
48
1.46
69605--69654
11
4.4
11
78
9
55
50
2
6
42
1.38
69654--69695
20
2.1
20
95
0
75
42
7
4
45
1.52
69681--69740
22
2.7
23
84
10
79
36
8
8
46
1.64
73386--73571
75
2.5
75
83
5
241
22
22
30
24
1.99
76146--76185
21
1.9
21
89
0
62
10
25
40
25
1.86

Tables:   1

The End!