Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007045.1 Hibiscus syriacus cultivar Beakdansim tig00018268_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64874

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4138--4198
19
3.3
19
73
17
74
3
14
31
50
1.59
4142--4205
18
3.6
18
75
23
71
4
14
29
51
1.62
6463--6506
13
3.5
13
93
6
81
15
54
15
13
1.71
6614--6659
12
3.9
12
88
2
67
30
47
10
10
1.73
6614--6659
24
2.0
24
91
4
76
30
47
10
10
1.73
13051--13109
29
2.0
31
86
6
86
25
0
15
59
1.36
15340--15439
44
2.3
44
84
3
121
31
19
20
30
1.96
21013--21073
28
2.2
28
93
0
113
45
18
6
29
1.74
22286--22324
21
1.9
21
84
5
53
28
15
5
51
1.64
24321--24399
24
3.5
24
72
19
78
30
18
20
30
1.97
24302--24400
44
2.2
44
90
0
153
28
20
22
29
1.98
24302--24375
20
3.5
20
73
20
69
25
21
24
28
1.99
24749--24801
18
2.9
18
91
0
79
54
7
5
32
1.52
26555--26586
2
16.0
2
93
0
55
50
3
0
46
1.17
27088--27135
22
2.2
22
92
0
78
14
58
12
14
1.64
28016--28066
24
2.0
24
85
11
66
50
0
5
43
1.26
28038--28576
37
14.4
37
87
3
681
45
5
7
41
1.54
28599--28653
22
2.6
21
85
5
76
14
7
0
78
0.96
30597--30640
2
22.0
2
90
9
72
47
0
2
50
1.13
30851--30994
22
6.5
22
94
0
243
28
18
25
27
1.98
43733--43782
2
25.0
2
100
0
100
50
0
0
50
1.00
44389--44603
45
4.8
45
83
2
270
31
20
8
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44389--44644
90
2.8
87
76
6
235
30
21
8
39
1.84
48051--48240
99
1.9
99
85
2
265
32
16
18
31
1.94
56825--56864
20
2.0
20
90
0
62
47
2
5
45
1.38
56778--56896
55
2.1
57
86
6
163
45
3
6
44
1.46
56845--57051
36
5.6
37
82
10
237
43
4
8
43
1.55
57073--57117
4
10.8
4
85
4
54
20
6
0
73
1.05
58455--58495
5
8.2
5
91
0
64
19
4
0
75
0.98
58404--58495
15
5.9
15
71
14
69
21
7
1
69
1.20
60027--60066
21
1.9
21
85
10
55
5
60
12
22
1.52
60795--60857
30
2.1
29
91
2
99
69
1
3
25
1.12
61656--61726
38
1.9
38
83
11
94
4
5
32
57
1.41
62109--62165
20
3.5
16
75
25
57
78
0
1
19
0.83
62108--62166
13
4.8
12
84
14
68
77
0
1
20
0.85
62114--62176
13
5.2
13
80
14
55
74
0
3
22
0.96
62224--62587
35
10.4
35
80
8
384
41
11
4
42
1.61
62191--62587
71
5.7
71
80
9
399
40
11
4
43
1.61

Tables:   1

The End!