Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007046.1 Hibiscus syriacus cultivar Beakdansim tig00018271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76291

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
210--252
2
22.0
2
95
4
79
51
0
0
48
1.00
2428--2472
24
1.9
23
90
4
72
31
2
15
51
1.56
2440--2477
19
2.1
19
85
5
51
31
5
10
52
1.58
4927--4977
23
2.2
23
85
0
66
29
19
9
41
1.84
4937--4986
23
2.2
23
88
0
73
30
16
12
42
1.84
4727--5010
154
1.9
150
89
2
442
33
11
13
41
1.81
5022--5072
23
2.2
23
86
6
68
41
15
5
37
1.72
4919--5089
86
2.0
87
84
1
227
34
12
9
43
1.74
7846--7935
39
2.3
39
80
0
99
33
24
24
17
1.96
9715--9801
19
4.6
19
95
0
156
33
16
22
27
1.95
10359--11052
81
8.6
81
92
0
1075
36
10
21
31
1.87
12133--12193
18
3.4
18
93
0
104
6
55
8
29
1.54
13756--14173
81
5.2
81
88
0
568
36
11
21
31
1.89
16964--17004
2
20.5
2
100
0
82
48
0
0
51
1.00
17002--17028
4
6.8
4
100
0
54
25
0
0
74
0.83
17614--17693
20
3.7
20
78
18
97
18
28
10
42
1.83
17602--17751
46
3.2
46
94
0
255
20
22
9
48
1.78
18176--18246
22
3.3
21
72
21
67
26
21
15
36
1.93
22352--22829
118
4.1
116
82
4
561
39
15
18
26
1.90
22382--22829
232
1.9
231
86
1
637
38
15
18
27
1.91
29543--29578
12
3.0
12
100
0
72
0
16
0
83
0.65
34277--34354
3
25.0
3
82
7
68
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35227--35287
20
2.8
22
85
11
74
29
1
1
67
1.10
36240--36274
15
2.3
15
90
5
52
20
5
0
74
1.02
42369--42708
114
3.0
114
93
0
556
33
15
19
31
1.93
44623--44780
54
3.0
54
85
6
209
37
17
22
22
1.93
45730--46098
186
2.0
185
95
1
659
32
14
14
39
1.86
46042--46444
75
5.3
75
94
1
700
23
20
21
34
1.97
46042--46444
151
2.7
150
92
1
700
23
20
21
34
1.97
46601--46688
3
30.0
3
78
13
85
42
0
0
57
0.98
46600--46688
25
3.4
26
82
11
101
42
0
0
57
0.98
47448--47525
35
2.2
35
97
0
147
33
12
30
23
1.92
47448--47536
35
2.5
35
90
3
115
35
13
30
20
1.91
47929--47987
20
2.7
22
85
12
70
28
1
1
67
1.10
56875--56916
15
2.8
15
92
0
75
7
35
28
28
1.84
61144--61204
19
3.3
19
73
17
74
3
14
31
50
1.59
61148--61211
18
3.6
18
75
23
71
4
14
29
51
1.62
69499--69555
28
2.0
28
82
6
69
26
0
15
57
1.38
74596--74630
4
8.8
4
100
0
70
25
0
0
74
0.82

Tables:   1

The End!