genome.fa.s7047.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007047.1 Hibiscus syriacus cultivar Beakdansim tig00018272_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93584

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278--1347	36	1.9	36	88	0	104	31	15	10	42	1.80
1153--1590	224	2.0	222	83	1	561	30	21	16	31	1.95
2754--2838	35	2.4	36	86	3	120	29	21	11	37	1.89
2779--2853	35	2.1	35	82	4	89	33	24	10	32	1.89
3044--3129	35	2.4	36	88	3	131	27	19	11	40	1.86
2522--3395	293	3.0	291	87	3	1158	36	20	13	30	1.90
4517--5049	42	12.7	42	79	5	481	32	26	18	22	1.97
4517--5049	84	6.4	85	81	7	538	32	26	18	22	1.97
4658--5011	120	2.9	120	80	4	332	32	27	17	22	1.96
5094--5328	42	5.6	43	75	4	187	27	27	20	24	1.99
5608--5644	3	12.3	3	94	0	65	64	2	32	0	1.07
12927--12969	15	2.9	15	82	3	52	6	9	69	13	1.35
14250--14292	15	2.8	15	78	3	50	30	0	0	69	0.88
14262--14297	18	2.0	18	88	0	54	27	0	0	72	0.85
15427--15489	19	3.3	18	76	10	63	34	11	12	41	1.79
15447--15553	20	5.5	19	70	19	69	29	12	17	40	1.86
15430--15500	18	3.8	18	72	15	56	33	14	15	36	1.87
15428--15553	38	3.3	39	81	9	143	31	11	16	39	1.85
15556--15773	81	2.7	81	85	0	292	35	13	24	26	1.93
15724--15810	39	2.2	40	97	2	167	31	11	28	28	1.92
15789--15903	60	1.9	60	91	3	187	38	14	21	25	1.92
17576--17623	16	3.1	15	79	8	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29252--29281	6	5.0	6	100	0	60	33	16	50	0	1.46
33104--33177	37	2.0	37	86	0	103	37	14	10	36	1.82
34287--34316	2	15.0	2	100	0	60	50	0	0	50	1.00
42761--42842	40	2.0	40	100	0	164	29	18	19	32	1.95
48175--48230	21	2.7	21	88	0	85	33	17	21	26	1.96
49238--49270	16	2.2	15	89	10	50	51	0	0	48	1.00
52932--52977	17	2.8	17	80	9	51	54	0	0	45	0.99
55990--56065	35	2.2	35	90	0	116	39	22	1	36	1.63
56461--56708	130	1.9	130	90	0	397	36	14	13	35	1.85
57181--57256	35	2.2	35	92	0	125	39	23	1	35	1.63
57651--57898	130	1.9	130	92	0	415	36	14	12	35	1.85
57665--57929	130	2.0	129	81	4	300	39	13	13	33	1.83
58225--58287	28	2.3	27	78	8	63	46	1	3	49	1.27
58947--59009	28	2.3	27	78	8	63	46	1	3	49	1.27
59089--59122	16	2.0	18	88	11	54	64	5	2	26	1.30
58144--59593	720	2.0	721	97	0	2755	40	7	9	42	1.67
60442--60487	20	2.3	20	100	0	92	26	4	28	41	1.74
60442--60493	20	2.7	20	93	3	79	23	5	28	42	1.77
64977--65060	41	2.0	41	90	0	132	27	19	14	39	1.90
72345--72388	21	2.1	21	86	0	61	36	6	2	54	1.40
74110--74165	26	2.2	26	80	6	60	32	1	8	57	1.40
74122--74173	26	2.0	26	96	0	95	23	3	9	63	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74523--74594	31	2.4	29	73	17	74	50	5	13	30	1.65
77639--77725	26	3.3	26	98	0	165	56	6	4	32	1.46
79234--79290	24	2.5	23	75	8	62	36	3	5	54	1.40
82568--82610	21	2.0	21	90	0	68	32	27	23	16	1.96
83238--83292	21	2.8	20	73	13	51	29	9	18	43	1.80
83157--83382	103	2.2	103	91	1	373	26	12	23	37	1.90
86169--86221	16	3.4	16	69	10	56	33	22	9	33	1.86
86158--86229	30	2.4	30	100	0	144	27	23	9	38	1.86

Tables:   1

The End!