Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007048.1 Hibiscus syriacus cultivar Beakdansim tig00018274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78589

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
897--1093
61
3.1
62
80
13
215
26
18
23
30
1.98
2252--2312
23
2.7
23
90
7
97
24
21
32
21
1.98
14422--14467
3
15.3
3
95
0
74
4
32
0
63
1.14
14599--14636
20
1.9
20
94
0
67
39
10
26
23
1.87
14831--14861
2
15.5
2
100
0
62
48
0
0
51
1.00
18251--18282
16
2.0
16
100
0
64
25
6
25
43
1.77
20292--20336
14
2.9
16
83
12
58
48
0
0
51
1.00
20295--20338
17
2.9
15
78
15
54
50
0
0
50
1.00
20329--20397
2
36.0
2
75
18
67
44
1
1
52
1.19
20562--20684
29
4.2
29
72
8
97
49
0
11
38
1.45
20663--20724
28
2.2
28
86
11
83
58
0
8
33
1.28
20570--20740
86
2.0
87
80
11
199
52
0
9
36
1.39
26873--26932
27
2.2
28
90
3
95
33
5
11
50
1.61
27084--27128
23
2.0
23
81
0
54
24
0
20
55
1.43
28524--28633
21
5.1
22
76
17
97
33
26
15
24
1.95
29247--29277
2
15.5
2
100
0
62
48
0
0
51
1.00
35028--35087
22
2.7
22
92
0
102
25
26
26
21
2.00
44594--45212
4
154.8
4
95
2
1086
48
24
0
26
1.54
45479--45799
169
1.9
169
98
0
624
31
25
13
28
1.94
49478--49539
32
1.9
32
93
0
106
22
27
27
22
1.99
54878--54922
17
2.7
17
86
3
56
35
17
15
31
1.92
58790--58942
77
2.0
76
79
7
166
39
11
4
44
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63246--63308
28
2.2
28
82
0
81
36
1
9
52
1.44
63269--63326
23
2.7
21
73
21
57
32
1
12
53
1.48
66510--66577
3
22.3
3
86
8
93
66
1
1
30
1.10
66732--66843
43
2.7
41
75
8
111
25
18
33
22
1.97
66771--67125
129
2.7
131
88
6
511
24
19
31
25
1.98
67406--67480
29
2.6
29
81
8
80
41
13
13
32
1.83
67406--67542
30
4.5
30
78
9
127
42
12
14
30
1.83
67494--67726
64
3.6
61
77
12
191
42
12
12
31
1.81
67689--67760
37
1.9
37
86
5
101
36
9
9
44
1.70
67630--67819
100
1.9
99
81
10
226
43
13
11
32
1.79
67891--68011
35
3.4
35
78
4
109
35
13
19
31
1.90
67991--68301
104
3.0
103
79
7
374
40
11
15
32
1.83
67974--68284
106
3.0
103
78
7
376
40
11
16
32
1.84
75228--75352
50
2.5
50
84
3
155
16
34
31
18
1.93
75463--75503
10
4.1
10
84
12
57
31
29
0
39
1.57
75518--75567
15
3.3
15
76
20
59
34
6
0
60
1.21
75522--75569
16
3.1
16
76
8
55
35
6
0
58
1.23

Tables:   1

The End!