Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007050.1 Hibiscus syriacus cultivar Beakdansim tig00018276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90602

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5269--5319
21
2.4
21
75
12
59
25
0
7
66
1.18
5309--5370
24
2.6
23
85
7
79
40
0
1
58
1.08
11553--11578
2
13.0
2
100
0
52
50
0
0
50
1.00
17217--17289
25
2.9
25
81
4
76
30
21
23
24
1.99
28150--28207
25
2.3
25
85
5
73
27
31
6
34
1.83
28154--28219
25
2.6
25
75
18
64
33
28
6
31
1.82
34360--34428
24
2.8
26
83
12
85
31
24
5
37
1.79
34393--34428
12
3.0
12
91
0
63
36
25
5
33
1.79
34819--34918
45
2.2
45
84
7
123
28
15
20
37
1.92
38451--38493
21
2.0
21
81
0
50
30
30
25
13
1.94
39023--39330
150
2.1
150
96
0
564
26
17
21
34
1.95
39306--39363
23
2.5
23
97
0
107
18
29
29
22
1.98
45998--46313
150
2.1
150
95
1
573
26
18
21
34
1.96
46281--46325
23
2.0
23
86
0
63
20
26
26
26
1.99
50405--50457
23
2.2
26
90
10
85
30
24
5
39
1.78
50769--50947
64
2.8
63
85
8
227
25
17
21
34
1.96
51005--51060
21
2.7
21
100
0
112
26
21
23
28
1.99
52675--52737
31
2.0
31
93
0
108
53
14
11
20
1.70
58556--58603
24
2.0
24
100
0
96
20
50
12
16
1.78
67096--67135
21
1.9
21
84
0
53
27
0
37
35
1.57
67112--67152
14
3.0
14
82
3
57
19
0
39
41
1.52
67734--67769
14
2.5
15
90
4
56
41
5
0
52
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69805--69856
26
2.1
24
86
13
70
48
0
1
50
1.12
71522--71549
2
14.0
2
100
0
56
50
0
0
50
1.00
72090--72241
78
1.9
78
95
0
277
28
17
13
40
1.87
79548--79579
16
2.0
16
93
0
55
40
25
0
34
1.56
83634--83667
6
5.7
6
100
0
68
17
0
67
14
1.23
86604--86649
13
3.5
13
76
5
56
69
0
10
19
1.17
86603--86664
27
2.2
28
94
2
108
66
1
9
22
1.30

Tables:   1

The End!