Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007052.1 Hibiscus syriacus cultivar Beakdansim tig00018288_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86064

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5730--5849
20
5.9
21
67
12
52
31
20
13
34
1.91
5833--5888
20
2.8
20
94
0
94
28
32
14
25
1.94
5892--5978
27
3.2
27
75
8
88
33
13
24
28
1.93
5946--5989
20
2.2
20
83
0
52
29
15
27
27
1.96
5919--6035
47
2.5
47
80
1
110
29
13
26
29
1.94
20021--20066
20
2.3
20
85
7
58
52
2
0
45
1.13
20051--20125
27
2.8
27
80
12
91
53
1
4
41
1.28
20067--20129
24
2.6
24
85
7
83
52
1
4
41
1.32
20171--20224
2
27.0
2
100
0
108
50
0
0
50
1.00
21746--21783
17
2.2
18
85
4
51
57
5
0
36
1.21
26928--26965
20
1.9
20
94
0
67
34
21
10
34
1.87
28000--28039
2
20.0
2
84
0
53
57
0
0
42
0.98
28004--28038
12
2.9
12
91
0
61
60
0
0
40
0.97
37818--37852
15
2.2
16
90
5
54
68
0
0
31
0.90
49146--49184
21
1.9
21
84
5
53
58
0
0
41
0.98
51911--51985
30
2.5
30
84
4
89
42
5
8
44
1.56
52150--52191
16
2.7
16
78
14
52
57
0
0
42
0.99
57717--57748
2
16.0
2
100
0
64
0
50
0
50
1.00
57748--57822
2
38.5
2
89
5
109
46
2
0
50
1.15
57777--57834
28
2.1
28
96
0
89
44
6
0
48
1.29
61004--61109
50
2.1
50
100
0
212
34
14
19
31
1.92
68984--69025
12
3.4
12
90
3
66
33
0
14
52
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69202--69240
20
2.0
20
85
10
53
46
0
7
46
1.31
72645--72697
19
2.8
18
77
8
52
43
1
0
54
1.11
72634--72679
25
2.0
24
84
16
62
43
2
0
54
1.12
73134--73211
33
2.4
33
82
4
95
19
23
6
51
1.69
78958--78988
15
2.1
15
93
0
53
45
0
0
54
0.99
79932--80006
26
2.8
26
78
13
73
29
0
2
68
1.04
81843--82006
42
3.9
41
78
4
148
25
17
6
51
1.67
81904--82020
43
2.8
43
78
7
132
22
18
6
52
1.69

Tables:   1

The End!