Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007053.1 Hibiscus syriacus cultivar Beakdansim tig00018289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65936

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145--188
19
2.2
20
84
11
56
61
15
0
22
1.34
6440--6587
65
2.3
65
81
10
171
32
16
22
29
1.95
15597--15628
12
2.6
12
95
5
55
84
0
9
6
0.78
15638--15668
16
1.9
16
93
0
53
48
0
12
38
1.42
15659--15697
11
3.2
12
89
7
53
69
0
0
30
0.89
16900--16926
2
13.5
2
100
0
54
51
0
0
48
1.00
17464--17597
36
3.7
36
82
10
184
30
8
17
43
1.79
17606--18304
36
19.9
36
76
11
592
42
12
18
26
1.86
17633--17988
139
2.6
138
89
1
534
42
13
18
25
1.87
17817--18105
102
2.8
102
86
4
395
42
11
19
26
1.85
19569--19750
95
1.9
95
92
2
303
29
19
19
31
1.96
23524--23587
8
7.9
8
76
13
51
79
1
6
12
0.98
23620--23658
11
3.2
12
89
7
53
69
0
0
30
0.89
23803--23843
18
2.4
18
80
19
52
63
7
12
17
1.50
24885--24937
2
26.5
2
100
0
106
50
0
0
49
1.00
26740--26768
14
2.1
14
93
6
51
44
3
6
44
1.47
29380--29570
76
2.5
77
82
5
226
40
7
13
39
1.72
31415--31467
24
2.2
24
83
3
63
24
16
16
41
1.89
32290--32405
60
1.9
60
81
6
137
37
6
7
48
1.59
32622--32706
43
2.0
43
88
4
127
38
28
3
29
1.73
39711--39767
28
2.0
28
100
0
114
17
17
24
40
1.91
41074--41139
26
2.5
26
78
9
71
68
1
4
25
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42375--42746
142
2.6
141
82
3
424
44
4
11
40
1.59
42376--42746
36
10.4
36
80
5
389
43
4
11
40
1.59
42376--42741
106
3.4
106
83
5
416
43
4
11
40
1.60
42777--42815
4
9.5
4
94
5
69
23
2
0
74
0.94
42779--42828
17
3.0
17
85
11
68
22
4
0
74
0.99
42764--42815
25
2.1
25
89
7
79
26
3
0
69
1.06
43894--43932
17
2.4
17
87
12
55
15
2
2
79
0.95
43894--43932
8
4.8
8
81
6
51
15
2
2
79
0.95
56283--56683
36
11.3
35
81
8
431
43
4
11
40
1.61
56285--56683
107
3.8
106
86
7
544
43
4
11
40
1.61
56708--56759
13
4.0
13
80
12
54
21
1
0
76
0.87
56709--56765
16
3.5
16
77
22
57
19
1
0
78
0.83
56709--56766
13
4.8
11
81
10
53
18
1
0
79
0.82
58042--58089
5
9.6
5
88
8
53
31
2
0
66
1.03
58009--58091
10
8.3
10
70
5
51
22
3
1
72
1.08
58024--58091
30
2.3
29
89
2
100
26
2
1
69
1.12
60369--60406
13
2.7
14
80
12
51
76
0
5
18
0.97
61726--61770
4
10.8
4
81
9
54
73
0
6
20
1.05
61929--62079
64
2.4
64
87
7
197
43
7
2
46
1.45
61792--62064
36
7.6
37
78
15
279
43
8
4
43
1.52
61966--62027
26
2.3
28
86
8
85
40
8
3
48
1.49

Tables:   1

The End!