Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007055.1 Hibiscus syriacus cultivar Beakdansim tig00018307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113378

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3742--3792
14
3.4
15
79
12
52
72
5
7
13
1.26
3817--3956
5
28.8
5
68
26
56
75
3
5
16
1.13
3843--3956
9
12.2
9
75
10
77
76
3
4
15
1.09
3772--3921
14
10.5
14
69
22
66
76
4
5
14
1.12
3773--3923
33
4.5
32
71
19
105
75
3
5
15
1.13
3772--4004
19
12.4
18
70
20
97
72
3
6
17
1.22
4031--4078
23
2.1
22
84
3
60
64
4
6
25
1.35
16115--16141
2
13.5
2
100
0
54
48
0
0
51
1.00
16678--16703
6
4.3
6
100
0
52
0
38
0
61
0.96
19335--19409
35
2.1
35
92
0
123
30
0
25
44
1.55
24039--24082
21
2.1
21
87
4
63
38
15
0
45
1.47
26540--26583
21
2.1
21
95
0
79
27
20
11
40
1.86
26546--26589
21
2.3
19
88
11
63
22
20
15
40
1.90
31198--31245
21
2.3
21
96
0
87
27
18
12
41
1.86
47071--47099
2
14.5
2
100
0
58
51
0
0
48
1.00
51207--51284
23
3.5
23
84
6
81
30
3
11
53
1.54
51218--51277
23
2.6
23
89
5
95
30
1
11
56
1.45
55765--55831
2
33.5
2
100
0
134
49
0
50
0
1.00
59969--60001
17
2.0
17
88
5
50
51
0
6
42
1.26
59856--60159
158
2.0
152
94
5
538
41
7
13
37
1.73
60127--60159
17
2.0
17
88
5
50
51
0
6
42
1.26
61800--61904
51
2.0
52
96
3
194
26
18
26
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65316--65372
13
3.9
14
75
13
53
38
3
0
57
1.16
67364--67623
28
9.3
28
87
4
337
43
13
3
39
1.63
67605--67709
29
3.7
28
82
6
140
39
15
5
40
1.71
68263--68315
20
2.7
20
85
11
65
26
5
7
60
1.46
68508--68633
35
3.6
36
69
14
102
51
0
1
46
1.16
68543--68587
18
2.6
18
89
3
65
51
2
2
44
1.26
69414--69457
21
2.1
21
83
8
54
22
11
0
65
1.24
69458--69502
21
2.1
22
84
12
58
71
0
6
22
1.09
69664--69737
32
2.3
31
77
11
78
64
6
6
21
1.41
69677--69739
32
2.0
32
84
12
85
65
6
7
20
1.42
69741--69791
26
1.9
27
84
11
70
47
0
0
52
1.00
71552--71852
148
2.0
146
89
3
462
36
17
16
29
1.92
80472--80727
121
2.1
122
87
8
371
51
4
3
40
1.40
86074--86121
20
2.4
20
96
0
87
4
20
8
66
1.35
103089--103153
31
2.1
31
82
5
78
36
4
4
53
1.42
103340--103477
21
6.7
21
71
6
77
37
25
16
20
1.93
103444--103637
20
9.6
20
79
5
203
36
25
19
19
1.94
103444--103637
60
3.2
60
82
0
235
36
25
19
19
1.94
104020--104090
33
2.2
33
92
0
115
11
22
18
47
1.80
104170--104279
21
5.8
20
74
17
108
45
18
24
11
1.83
104163--104279
41
3.1
38
81
14
145
46
17
25
11
1.81
104230--104286
14
3.7
14
75
20
60
43
22
24
8
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104222--104302
33
2.5
33
95
0
144
46
22
22
8
1.78
104298--104395
19
5.7
19
70
22
90
10
23
22
43
1.83
104320--104409
14
5.7
14
72
23
72
8
24
23
43
1.82
104303--104417
33
3.5
33
97
0
221
9
23
20
46
1.80
106116--106582
93
5.1
93
98
1
904
22
12
19
46
1.83
106116--106582
184
2.5
185
98
0
900
22
12
19
46
1.83
106630--106764
19
7.6
19
76
16
137
45
24
19
10
1.81
106686--106742
14
3.7
14
77
20
60
45
24
21
8
1.80
106667--106759
33
2.8
33
98
0
177
47
22
20
9
1.79
106630--106764
52
2.5
54
75
18
131
45
24
19
10
1.81
106760--106888
19
7.3
19
75
17
125
8
17
28
45
1.77
106760--106851
33
2.8
33
93
3
150
7
18
28
45
1.76
109628--109674
24
2.0
24
87
8
69
38
21
14
25
1.92
110356--110565
20
10.5
20
84
5
228
20
18
25
36
1.95
110552--110634
21
4.0
21
73
6
78
25
16
24
33
1.96
110800--110912
29
3.7
30
73
12
88
45
7
9
37
1.67
110817--110880
30
2.1
32
82
11
80
46
6
7
39
1.58

Tables:   1

The End!