Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007056.1 Hibiscus syriacus cultivar Beakdansim tig00018308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68514

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4786--4974
102
1.9
102
91
0
315
22
17
29
30
1.97
17039--17100
21
3.0
20
81
9
79
20
25
17
35
1.95
17090--17162
21
3.5
21
92
1
112
38
16
23
21
1.93
17160--17239
20
4.0
20
76
9
81
36
27
15
21
1.93
17975--18028
24
2.2
24
93
0
90
24
14
20
40
1.90
20495--20607
20
5.7
20
87
2
111
41
19
22
16
1.90
20597--20642
14
2.8
16
78
21
51
13
21
19
45
1.84
20647--20684
20
1.9
20
94
0
67
13
13
28
44
1.81
22228--22319
42
2.2
42
84
1
123
22
14
41
21
1.89
22661--22785
20
6.7
19
79
11
107
44
21
20
14
1.87
22792--22914
20
6.6
19
76
11
112
13
19
22
44
1.85
24667--24721
18
3.2
16
76
16
56
23
7
7
61
1.47
27799--27866
20
3.4
20
89
0
91
42
25
16
16
1.87
28099--28153
22
2.5
22
87
0
83
18
16
45
20
1.86
30486--30579
28
3.6
28
75
20
114
38
21
22
18
1.93
30498--30546
21
2.3
21
96
0
89
40
20
18
20
1.91
30519--30591
28
2.6
28
85
6
87
39
20
23
16
1.92
37041--37177
29
4.6
29
76
8
132
27
8
10
54
1.63
37041--37177
59
2.3
60
86
3
197
27
8
10
54
1.63
37041--37177
30
4.6
30
78
8
136
27
8
10
54
1.63
38192--38224
2
16.5
2
100
0
66
0
48
0
51
1.00
38224--38253
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50342--50387
23
2.0
23
95
0
83
36
13
8
41
1.75
50530--50925
197
2.0
198
93
1
670
35
10
15
37
1.82
51732--51910
61
3.0
60
80
4
200
31
13
11
43
1.80
51747--51916
59
2.8
61
77
7
193
30
14
11
43
1.81
51976--52058
41
2.0
41
100
0
166
38
7
14
39
1.74
53130--53254
39
3.2
39
81
4
144
44
16
7
32
1.74
54514--54541
12
2.3
12
100
0
56
50
0
0
50
1.00

Tables:   1

The End!