Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007057.1 Hibiscus syriacus cultivar Beakdansim tig00018311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88840
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:41 original size:11 final size:11
Alignment explanation
Indices: 25--54 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
15 AAGCTTTCAT
25 CTTTCTCTTTC
1 CTTTCTCTTTC
36 CTTTCTCTTTC
1 CTTTCTCTTTC
*
47 TTTTCTCT
1 CTTTCTCT
55 CATATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
CTTTCTCTTTC
Found at i:46 original size:17 final size:17
Alignment explanation
Indices: 18--51 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8 AGCAGATAAG
18 CTTTCATCTTTCTCTTTC
1 CTTTCATCTTTCT-TTTC
36 CTTTC-TCTTTCTTTTC
1 CTTTCATCTTTCTTTTC
52 TCTCATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTTCATCTTTCTTTTC
Found at i:51 original size:5 final size:6
Alignment explanation
Indices: 18--54 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
8 AGCAGATAAG
18 CTTTCAT CTTTCT CTTTC- CTTTCT CTTTCT -TTTCT CT
1 CTTTC-T CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CT
55 CATATTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 10 0.36
6 13 0.46
7 5 0.18
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (6 bp):
CTTTCT
Found at i:5700 original size:15 final size:14
Alignment explanation
Indices: 5661--5703 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
5651 CAAATATAGT
5661 TAAAAA-TTAATTA
1 TAAAAATTTAATTA
*
5674 TAAAAATATAATATA
1 TAAAAATTTAAT-TA
*
5689 TAATAATTTAATTA
1 TAAAAATTTAATTA
5703 T
1 T
5704 TTATTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 6 0.24
14 7 0.28
15 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TAAAAATTTAATTA
Found at i:7481 original size:60 final size:60
Alignment explanation
Indices: 7374--7488 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
7364 GATACATCAC
* * *
7374 CCTTCTTGTAATTGTGTGTGTATCCCGTACAATACATCACCACTTTCATATTTAGGTGTA
1 CCTTCTTGTAATTGGGTGTGTATCCCATACAAAACATCACCACTTTCATATTTAGGTGTA
7434 CCTTGCTTGTAATTGGGTGTGTAT-CCATACAAAACATCACCACTTTCATATTTAG
1 CCTT-CTTGTAATTGGGTGTGTATCCCATACAAAACATCACCACTTTCATATTTAG
7489 ATATGTACCC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
60 33 0.65
61 18 0.35
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (60 bp):
CCTTCTTGTAATTGGGTGTGTATCCCATACAAAACATCACCACTTTCATATTTAGGTGTA
Found at i:7522 original size:40 final size:40
Alignment explanation
Indices: 7467--7554 Score: 176
Period size: 40 Copynumber: 2.2 Consensus size: 40
7457 TCCATACAAA
7467 ACATCACCACTTTCATATTTAGATATGTACCCCGTGCGAT
1 ACATCACCACTTTCATATTTAGATATGTACCCCGTGCGAT
7507 ACATCACCACTTTCATATTTAGATATGTACCCCGTGCGAT
1 ACATCACCACTTTCATATTTAGATATGTACCCCGTGCGAT
7547 ACATCACC
1 ACATCACC
7555 TTGCTTTGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (40 bp):
ACATCACCACTTTCATATTTAGATATGTACCCCGTGCGAT
Found at i:7602 original size:81 final size:80
Alignment explanation
Indices: 7505--7722 Score: 283
Period size: 81 Copynumber: 2.7 Consensus size: 80
7495 ACCCCGTGCG
* * *
7505 ATACATCACCACTTTCATATTTAGATATGTACCCCGTGCGATACATCACCTTGCTTTGTAATTGG
1 ATACATCACCACTTTCATATTTAG-TGTGTACCCCGTACGATACATCACCTTGCTTTGTAACTGG
** *
7570 GTGTGTATCCCATTCA
65 GAATGTATCCCATACA
* * * *
7586 ATACATTACCACTTTCATATTTAGGCGTGTACCCCGTACAATACATCACTTTGCTTTGTAACTGG
1 ATACATCACCACTTTCATATTTA-GTGTGTACCCCGTACGATACATCACCTTGCTTTGTAACTGG
* *
7651 GAATGTATCTCGTACA
65 GAATGTATCCCATACA
* *
7667 ATACATCACCACTTACATATTTATGTGTGTACCTCGTACGATACATCACCTTGCTT
1 ATACATCACCACTTTCATATTTA-GTGTGTACCCCGTACGATACATCACCTTGCTT
7723 ATAACCTAAA
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 116 0.99
82 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (80 bp):
ATACATCACCACTTTCATATTTAGTGTGTACCCCGTACGATACATCACCTTGCTTTGTAACTGGG
AATGTATCCCATACA
Found at i:7628 original size:40 final size:40
Alignment explanation
Indices: 7461--7634 Score: 161
Period size: 40 Copynumber: 4.3 Consensus size: 40
7451 TGTGTATCCA
*
7461 TACAAAACATCACCACTTTCATATTTAGATATGTACCCCG
1 TACAATACATCACCACTTTCATATTTAGATATGTACCCCG
* *
7501 TGCGATACATCACCACTTTCATATTTAGATATGTACCCCG
1 TACAATACATCACCACTTTCATATTTAGATATGTACCCCG
* * * * * * * * * *
7541 TGCGATACATCACCTTGCTTT-GTAATTGGGTGTGTATCCCA
1 TACAATACATCACC--ACTTTCATATTTAGATATGTACCCCG
* * ***
7582 TTCAATACATTACCACTTTCATATTTAGGCGTGTACCCCG
1 TACAATACATCACCACTTTCATATTTAGATATGTACCCCG
7622 TACAATACATCAC
1 TACAATACATCAC
7635 TTTGCTTTGT
Statistics
Matches: 108, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 4 0.04
40 76 0.70
41 24 0.22
42 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (40 bp):
TACAATACATCACCACTTTCATATTTAGATATGTACCCCG
Found at i:7750 original size:20 final size:20
Alignment explanation
Indices: 7725--7831 Score: 71
Period size: 20 Copynumber: 5.5 Consensus size: 20
7715 CCTTGCTTAT
*
7725 AACCTAAAAATCTGATTTGC
1 AACCTAAAAATCTGAGTTGC
* *
7745 AACCT-AAAATTTG-GATTCC
1 AACCTAAAAATCTGAG-TTGC
* *
7764 AACATGAAAATCT-AGGTTGC
1 AACCTAAAAATCTGA-GTTGC
* *
7784 AACCT-AAAATATG-GATTTC
1 AACCTAAAAATCTGAG-TTGC
* *
7803 AACCTTAAAATTTGAGTTGC
1 AACCTAAAAATCTGAGTTGC
7823 AACCTAAAA
1 AACCTAAAA
7832 TATGGTTTCT
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
18 1 0.01
19 28 0.42
20 36 0.54
21 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (20 bp):
AACCTAAAAATCTGAGTTGC
Found at i:7766 original size:19 final size:19
Alignment explanation
Indices: 7741--7832 Score: 89
Period size: 19 Copynumber: 4.7 Consensus size: 19
7731 AAAATCTGAT
7741 TTGCAACCTAAAATTTGGA
1 TTGCAACCTAAAATTTGGA
* * *
7760 TTCCAACATGAAAATCTAGG-
1 TTGCAACCT-AAAAT-TTGGA
*
7780 TTGCAACCTAAAATATGGA
1 TTGCAACCTAAAATTTGGA
*
7799 TTTCAACCTTAAAATTT-GA
1 TTGCAACC-TAAAATTTGGA
7818 GTTGCAACCTAAAAT
1 -TTGCAACCTAAAAT
7833 ATGGTTTCTA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.03
19 27 0.47
20 26 0.45
21 3 0.05
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
TTGCAACCTAAAATTTGGA
Found at i:7849 original size:19 final size:18
Alignment explanation
Indices: 7778--7850 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 18
7768 TGAAAATCTA
* *
7778 GGTTGCAACCTAAAATAT
1 GGTTTCAACTTAAAATAT
*
7796 GGATTTCAACCTTAAAATTT
1 GG-TTTCAA-CTTAAAATAT
* *
7816 GAGTTGCAACCTAAAATAT
1 G-GTTTCAACTTAAAATAT
7835 GGTTTCTAACTTAAAA
1 GGTTTC-AACTTAAAA
7851 ATAATAATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
18 6 0.14
19 22 0.51
20 14 0.33
21 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (18 bp):
GGTTTCAACTTAAAATAT
Found at i:7852 original size:39 final size:39
Alignment explanation
Indices: 7724--7852 Score: 138
Period size: 39 Copynumber: 3.3 Consensus size: 39
7714 ACCTTGCTTA
* * * *
7724 TAACCTAAAAATCTGATTTGCAACCTAAAATTTGGATTC
1 TAACTTAAAAATCTGAGTTGCAACCTAAAATATGGTTTC
* * *
7763 CAACATGAAAATCT-AGGTTGCAACCTAAAATATGGATTTC
1 TAACTTAAAAATCTGA-GTTGCAACCTAAAATATGG-TTTC
*
7803 -AACCTT-AAAATTTGAGTTGCAACCTAAAATATGGTTTC
1 TAA-CTTAAAAATCTGAGTTGCAACCTAAAATATGGTTTC
7841 TAACTTAAAAAT
1 TAACTTAAAAAT
7853 AATAATGTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
38 8 0.11
39 62 0.82
40 6 0.08
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (39 bp):
TAACTTAAAAATCTGAGTTGCAACCTAAAATATGGTTTC
Found at i:9007 original size:10 final size:10
Alignment explanation
Indices: 8992--9034 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
8982 TCATATATAT
8992 AATAATAATA
1 AATAATAATA
9002 AATAAT-ATA
1 AATAATAATA
*
9011 AA-AATAAAA
1 AATAATAATA
*
9020 AATAATATTA
1 AATAATAATA
9030 AATAA
1 AATAA
9035 ATGTTATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 3 0.11
9 9 0.32
10 16 0.57
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAATAATA
Found at i:9011 original size:18 final size:18
Alignment explanation
Indices: 8988--9027 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8978 AAAATCATAT
* *
8988 ATATAATAATAATAAATA
1 ATATAAAAATAAAAAATA
9006 ATATAAAAATAAAAAATA
1 ATATAAAAATAAAAAATA
9024 ATAT
1 ATAT
9028 TAAATAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
ATATAAAAATAAAAAATA
Found at i:10345 original size:15 final size:15
Alignment explanation
Indices: 10325--10369 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
10315 ACATTACCCG
10325 CCCCCGCATCCGCCC
1 CCCCCGCATCCGCCC
*
10340 CCCCCGCATCCACCC
1 CCCCCGCATCCGCCC
* *
10355 ACCCCACATCCGCCC
1 CCCCCGCATCCGCCC
10370 GCCCAGCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.13, C:0.71, G:0.09, T:0.07
Consensus pattern (15 bp):
CCCCCGCATCCGCCC
Found at i:17710 original size:3 final size:3
Alignment explanation
Indices: 17702--17738 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
17692 TGGGGATGGT
*
17702 TTC TTC TTC TTC GTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
17739 CCTGCTGTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:18067 original size:42 final size:42
Alignment explanation
Indices: 18021--18256 Score: 197
Period size: 42 Copynumber: 5.6 Consensus size: 42
18011 GGTTACTCCT
* *
18021 GAGAAGAGAGTCATCAACAATTCTGGTGTTTCGATCTCTTCG
1 GAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGATCTCTTCG
* * * * *
18063 GAGAAGAAAGTCACCACCGGTTCTGGTGTTTCGAT-TAATCCG
1 GAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGATCT-CTTCG
* * * * * *
18105 GAGAAGAAATTCATCAACGGTCCTGGTGCTTCGGTCACTTCG
1 GAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGATCTCTTCG
* * * *
18147 G-GAGAGAAAGCCATCAACAGTTCTGGTGTTTGGGTTTCTTCG
1 GAGA-AGAAAGTCATCAACAGTTCTGGTGTTTCGATCTCTTCG
* * * * * * *
18189 GAGAATAAAGTCATCAGCGGTTCTGGCGTTTCGGTCACTCCG
1 GAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGATCTCTTCG
* * *
18231 GAGAGGAAATTCACCAACAGTTCTGG
1 GAGAAGAAAGTCATCAACAGTTCTGG
18257 ACCTTCTGGT
Statistics
Matches: 151, Mismatches: 39, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
41 3 0.02
42 146 0.97
43 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (42 bp):
GAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGATCTCTTCG
Found at i:18146 original size:84 final size:84
Alignment explanation
Indices: 18021--18256 Score: 240
Period size: 84 Copynumber: 2.8 Consensus size: 84
18011 GGTTACTCCT
* ** * * * * *
18021 GAGAAGAGAGTCATCAACAATTCTGGTGTTTCGATCTCTTCGGAGAAGAAAGTCACCACCGGTTC
1 GAGAAGAAAGTCATCAACGGTCCTGGTGTTTCGGTCACTTCGGAGAAGAAAGTCACCAACAGTTC
18086 TGGTGTTTCGATTAATCCG
66 TGGTGTTTCGATTAATCCG
* * * *
18105 GAGAAGAAATTCATCAACGGTCCTGGTGCTTCGGTCACTTCGG-GAGAGAAAGCCATCAACAGTT
1 GAGAAGAAAGTCATCAACGGTCCTGGTGTTTCGGTCACTTCGGAGA-AGAAAGTCACCAACAGTT
* * ** *
18169 CTGGTGTTTGGGTTTCTTCG
65 CTGGTGTTTCGATTAATCCG
* * * * * * *
18189 GAGAATAAAGTCATCAGCGGTTCTGGCGTTTCGGTCACTCCGGAGAGGAAATTCACCAACAGTTC
1 GAGAAGAAAGTCATCAACGGTCCTGGTGTTTCGGTCACTTCGGAGAAGAAAGTCACCAACAGTTC
18254 TGG
66 TGG
18257 ACCTTCTGGT
Statistics
Matches: 122, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
83 2 0.02
84 118 0.97
85 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (84 bp):
GAGAAGAAAGTCATCAACGGTCCTGGTGTTTCGGTCACTTCGGAGAAGAAAGTCACCAACAGTTC
TGGTGTTTCGATTAATCCG
Found at i:18364 original size:42 final size:42
Alignment explanation
Indices: 18318--18836 Score: 478
Period size: 42 Copynumber: 12.4 Consensus size: 42
18308 GGTCATCCAC
** * *
18318 GGTTCTGGTGTTTCTCTTCCTTCTGAGAAGAAAGTCATTATT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * **
18360 GGTTCTGGTGTTTCAGTCCCTTCGGAGAAGAAAGTCATCAAC
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * * * * * *
18402 AGTTCTGGTATTTCTGCTCCTCCGGAGAAGAAATTCATCTTT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* **
18444 GGTTCTGGTGTTTC---T--GT-GGAGAAGAAAGTCATCAAC
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * * * *
18480 AGTTCTGGTGTTTCGATTCCTTCGGAAAAGAAATTCATCTTT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * *
18522 GGTGCTGGTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCGTT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
*
18564 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAAAAAGTCATCATT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * * *
18606 GGTTCGGGGGTTTCGGTTCCTTCGGAGAAGAAAATCATCGA-A
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATC-ATT
* *
18648 GGTTCTGGCGGTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * **
18690 GGTTCTACTAGTGGTTCGGTTCCTTCGGAGAAGAAAGTCATCAAC
1 GG-T-T-CTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
* * * **
18735 AGTTCTGGCGTTTCGGTTCCTTCGGAGAAGAAGAAAGCCATCAAC
1 GGTTCTGGTGTTTCGGTTCCTTC-G-G-AGAAGAAAGTCATCATT
* * * * * *
18780 AGTTCTGGTGTTTCGGTTACTTCAGACAAGAAAGTCATTGA-C
1 GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCA-TCATT
18822 GGTTCTGGTGTTTCG
1 GGTTCTGGTGTTTCG
18837 TCTACACCGT
Statistics
Matches: 393, Mismatches: 69, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
36 28 0.07
39 2 0.01
41 2 0.01
42 279 0.71
43 7 0.02
44 3 0.01
45 72 0.18
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (42 bp):
GGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATT
Found at i:18397 original size:84 final size:84
Alignment explanation
Indices: 18302--18836 Score: 553
Period size: 84 Copynumber: 6.4 Consensus size: 84
18292 TAACTTCGAT
* * ** * *
18302 GAAGAAGGTCATCCACGGTTCTGGTGTTTCTCTTCCTTCTGAGAAGAAAGTCATTATTGGTTCTG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCTG
* *
18367 GTGTTTCAGTCCCTTCGGA
66 GTGTTTCGGTTCCTTCGGA
* * * * * * *
18386 GAAGAAAGTCATCAACAGTTCTGGTATTTCTGCTCCTCCGGAGAAGAAATTCATCTTTGGTTCTG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCTG
*
18451 GTGTTTC---T--GT-GGA
66 GTGTTTCGGTTCCTTCGGA
* * * * * *
18464 GAAGAAAGTCATCAACAGTTCTGGTGTTTCGATTCCTTCGGAAAAGAAATTCATCTTTGGTGCTG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCTG
*
18529 GTGCTTCGGTTCCTTCGGA
66 GTGTTTCGGTTCCTTCGGA
*** * *
18548 GAAGAAAGTCATCGTTGGTTCTGGTGTTTCGGTTCCTTCGGAGAAAAAAGTCATCATTGGTTCGG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCTG
*
18613 GGGTTTCGGTTCCTTCGGA
66 GTGTTTCGGTTCCTTCGGA
* * *
18632 GAAGAAAATCATCGAA-GGTTCTGGCGGTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCT
1 GAAGAAAGTCATC-AACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGG-T-T
* *
18696 ACTAGTGGTTCGGTTCCTTCGGA
63 -CTGGTGTTTCGGTTCCTTCGGA
* * * ***
18719 GAAGAAAGTCATCAACAGTTCTGGCGTTTCGGTTCCTTCGGAGAAGAAGAAAGCCATCAACAGTT
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTC-G-G-AGAAGAAAGTCATCATTGGTT
* *
18784 CTGGTGTTTCGGTTACTTCAGA
63 CTGGTGTTTCGGTTCCTTCGGA
* **
18806 CAAGAAAGTCATTGACGGTTCTGGTGTTTCG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCG
18837 TCTACACCGT
Statistics
Matches: 376, Mismatches: 61, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
78 67 0.18
79 1 0.00
81 1 0.00
83 1 0.00
84 188 0.50
85 1 0.00
86 3 0.01
87 95 0.25
88 2 0.01
89 2 0.01
90 15 0.04
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (84 bp):
GAAGAAAGTCATCAACGGTTCTGGTGTTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCTG
GTGTTTCGGTTCCTTCGGA
Found at i:18546 original size:162 final size:165
Alignment explanation
Indices: 18302--18766 Score: 508
Period size: 162 Copynumber: 2.8 Consensus size: 165
18292 TAACTTCGAT
* * ** * *
18302 GAAGAAGGTCATCCACGGTTCTGGTGTTTCTCTTCCTTCTGAGAAGAAAGTCAT-TATTGGTTCT
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGATTCCTTCGGAGAAGAAAGTCATCT-TTGGTACT
* * * * * * *
18366 GGTGTTTCAGTCCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGTATTTCTGCTCCTCCGGAGAA
65 GGTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGGTTCCTTCGGAGAA
* * * *
18431 GAAATTCATCTTTGGTTCTGGTGTTTC-T-GT-GGA
130 GAAAGTCATCATTGGTTCGGGGGTTTCGTCGTCGGA
* * * *
18464 GAAGAAAGTCATCAACAGTTCTGGTGTTTCGATTCCTTCGGAAAAGAAATTCATCTTTGGTGCTG
1 GAAGAAAGTCATCAACGGTTCTGGTGTTTCGATTCCTTCGGAGAAGAAAGTCATCTTTGGTACTG
**** *
18529 GTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCGTTGGTTCTGGTGTTTCGGTTCCTTCGGAGAAA
66 GTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGGTTCCTTCGGAGAAG
*
18594 AAAGTCATCATTGGTTCGGGGGTTTCGGTTCCTTCGGA
131 AAAGTCATCATTGGTTCGGGGGTTTC-G-T-CGTCGGA
* * * * *
18632 GAAGAAAATCATCGAA-GGTTCTGGCGGTTCGGTTCCTTCGGAGAAGAAAGTCATCATTGGTTCT
1 GAAGAAAGTCATC-AACGGTTCTGGTGTTTCGATTCCTTCGGAGAAGAAAGTCATCTTTGG---T
* * *
18696 ACTAGTGGTTCGGTTCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGCGTTTCGGTTCCTTCGGA
62 ACTGGTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGGTTCCTTCGGA
18761 GAAGAA
127 GAAGAA
18767 GAAAGCCATC
Statistics
Matches: 249, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
162 129 0.52
163 1 0.00
165 1 0.00
167 1 0.00
168 52 0.21
169 2 0.01
171 63 0.25
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (165 bp):
GAAGAAAGTCATCAACGGTTCTGGTGTTTCGATTCCTTCGGAGAAGAAAGTCATCTTTGGTACTG
GTGCTTCGGTTCCTTCGGAGAAGAAAGTCATCAACAGTTCTGGTGTTTCGGTTCCTTCGGAGAAG
AAAGTCATCATTGGTTCGGGGGTTTCGTCGTCGGA
Found at i:20269 original size:35 final size:36
Alignment explanation
Indices: 20230--20316 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 36
20220 GTTATTGATG
20230 GATTAAGTAGA-ATGACCAAGTGTTAGTAATCAAAC
1 GATTAAGTAGATATGACCAAGTGTTAGTAATCAAAC
* * *
20265 GATTAAGTAGATACGACCACGTGTTATTAATCAAAC
1 GATTAAGTAGATATGACCAAGTGTTAGTAATCAAAC
20301 GATTAAGTAGATATGA
1 GATTAAGTAGATATGA
20317 ACACATTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
35 11 0.23
36 36 0.77
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (36 bp):
GATTAAGTAGATATGACCAAGTGTTAGTAATCAAAC
Found at i:20562 original size:35 final size:36
Alignment explanation
Indices: 20523--20609 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 36
20513 GTTATTGATG
*
20523 GATTAAGTAGA-ATGACCACGTGTTAGTAATCAAAT
1 GATTAAGTAGATATGACCACGTGTTAGTAATCAAAC
* * *
20558 GATTAAGTAGATACGGCCACGTGTTATTAATCAAAC
1 GATTAAGTAGATATGACCACGTGTTAGTAATCAAAC
20594 GATTAAGTAGATATGA
1 GATTAAGTAGATATGA
20610 ACACATTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
35 11 0.24
36 34 0.76
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (36 bp):
GATTAAGTAGATATGACCACGTGTTAGTAATCAAAC
Found at i:20580 original size:293 final size:294
Alignment explanation
Indices: 19991--20840 Score: 1289
Period size: 294 Copynumber: 2.9 Consensus size: 294
19981 TTATGAGCTT
* * * *
19991 TGTTAGTAATCAAACGATTAAGTAGATATGAACACGTTTTAGAGCATAATGACTGTTCACCTATC
1 TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
* *
20056 CAGAAAGTTAGGGATCCATACTAGTTTTGATGTGCATACGTTTCTTTCTCATTTGGTTCTTTCCT
66 CAGAAAGTTAGGGATGCATACTAGTTTTGATGTGCATATGTTTCTTTCTCATTTGGTTCTTTCCT
* * * * *
20121 ACATGCATAAGTCAGATAAAATGTTAATAGTTTGCCAACAGTCAATGGCTTGGAGAAACATGTTA
131 ACATGCACAAGTCAGATAGAATGTTATTAGTTTGCCAACCGTCAATTGCTTGGAGAAACATGTTA
* *
20186 GTAAATTATTGGATAGTAATTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACCAAGT
196 GT-AATTATTGGATAGTAGTTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACCACGT
20251 GTTAGTAATCAAACGATTAAGTAGATACGACCACG
260 GTTAGTAATCAAACGATTAAGTAGATACGACCACG
20286 TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
1 TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
*
20351 CGGAAAGTTAGGGATGCATACT-GTTTTGATGTGCATATGTTTCTTTCTCATTTGGTTCTTTCCT
66 CAGAAAGTTAGGGATGCATACTAGTTTTGATGTGCATATGTTTCTTTCTCATTTGGTTCTTTCCT
* *
20415 ACATGCACAAGTCAGATAGAATGTTCTTAGTTTGCCAACCGTCAATTGCTTGGAGAAGCATGTTA
131 ACATGCACAAGTCAGATAGAATGTTATTAGTTTGCCAACCGTCAATTGCTTGGAGAAACATGTTA
20480 GTAATTATTGGATAGTAGTTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACCACGTG
196 GTAATTATTGGATAGTAGTTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACCACGTG
* *
20545 TTAGTAATCAAATGATTAAGTAGATACGGCCACG
261 TTAGTAATCAAACGATTAAGTAGATACGACCACG
20579 TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
1 TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
* * * * **
20644 CTA-AAAGTTAGGGATGCATACTAGTTTTGGTGTTCTTGTGTTTCTTTCTCATTTTTTTCTTTCC
66 C-AGAAAGTTAGGGATGCATACTAGTTTTGATGTGCATATGTTTCTTTCTCATTTGGTTCTTTCC
* * * * *
20708 AACATGCATC-AGTCAGAT-GAAATATTTTTAGTTTACCAACAAC-T-GATTGCTTGGAGAAACA
130 TACATGCA-CAAGTCAGATAG-AATGTTATTAGTTTGCCAAC--CGTCAATTGCTTGGAGAAACA
* * * * *
20769 TGTTAGTAGTAATTGGATAGTAGCTGTGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGATC
191 TGTTAGTAATTATTGGATAGTAGTTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACC
*
20834 ACATGTT
256 ACGTGTT
20841 GTGTCAAATA
Statistics
Matches: 512, Mismatches: 37, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
293 179 0.35
294 249 0.49
295 83 0.16
296 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (294 bp):
TGTTATTAATCAAACGATTAAGTAGATATGAACACATTTTAGAGCATAATGACTGTTTACCAATC
CAGAAAGTTAGGGATGCATACTAGTTTTGATGTGCATATGTTTCTTTCTCATTTGGTTCTTTCCT
ACATGCACAAGTCAGATAGAATGTTATTAGTTTGCCAACCGTCAATTGCTTGGAGAAACATGTTA
GTAATTATTGGATAGTAGTTATGAGCTTTGTTAGTTATTGATGGATTAAGTAGAATGACCACGTG
TTAGTAATCAAACGATTAAGTAGATACGACCACG
Found at i:21787 original size:259 final size:258
Alignment explanation
Indices: 21362--21838 Score: 607
Period size: 259 Copynumber: 1.8 Consensus size: 258
21352 TGTTAATCGG
* **
21362 TCAAGAAACTTCGGGATGCATACTTGTTTTGATGTGCATGTTTTCTTTCTCATTTAGTTCTTTGT
1 TCAAGAAACTTCGGGATGCATACTTGTTTTGATGTGCATGTTTTCTTTCTCATTTAGCTCTTTCC
* *
21427 AACATGCTTCGGTCAGATAAAATGTTCTCTGTTTCCTGACAGTTGATTGATTGGAGAAACGCATT
66 AACATGCATCGGTCAGATAAAATGTTCTCTGTGTCCTGACAGTTGATTGATTGGAGAAACGCATT
* * * * * *
21492 AGCAGTTATTGGATAGTAGTTTTGAGCTTTGTTAGTTATTGATGG-ATATAGTAGATAAGGCCAC
131 AGCAATTATTGGATAGTAGTTATGACCTTTGTTAGTTAATGACGGTATA-AGTAGATAAGACCAC
*
21556 AAGTTAGTAATCAAACGATTAAGTAGATGTGGAAATAACTTAGAGCATGACAACCGTTTTTTAA
195 AAGTTAGTAATCAAACAATTAAGTAGATGTGGAAATAACTTAGAGCATGACAACCGTTTTTTAA
* * * * * * *
21620 TCAAGAAACTTTGGGATGCATGCTTGTTTTGATGTGGATTTGTTTGTTTCTTATTTTGCTCTTTC
1 TCAAGAAACTTCGGGATGCATACTTGTTTTGATGTGCATGT-TTTCTTTCTCATTTAGCTCTTTC
* * * * ** * **
21685 CGATATGCATCGGTTAGATAAAATGTTCT-TAGTGTGCTGGTAGTTGATTGATTGGAGAAATGTG
65 CAACATGCATCGGTCAGATAAAATGTTCTCT-GTGTCCTGACAGTTGATTGATTGGAGAAACGCA
* * * *
21749 TTAGTAATTTTTGGATAGTAGTTATGACCTTTGTTAGTTAATGACGGTTTAAGTAGATATGACCA
129 TTAGCAATTATTGGATAGTAGTTATGACCTTTGTTAGTTAATGACGGTATAAGTAGATAAGACCA
**
21814 CGTGTTAGTAATCAAACAATTAAGT
194 CAAGTTAGTAATCAAACAATTAAGT
21839 CGATACTGAA
Statistics
Matches: 182, Mismatches: 34, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
258 38 0.21
259 142 0.78
260 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.39
Consensus pattern (258 bp):
TCAAGAAACTTCGGGATGCATACTTGTTTTGATGTGCATGTTTTCTTTCTCATTTAGCTCTTTCC
AACATGCATCGGTCAGATAAAATGTTCTCTGTGTCCTGACAGTTGATTGATTGGAGAAACGCATT
AGCAATTATTGGATAGTAGTTATGACCTTTGTTAGTTAATGACGGTATAAGTAGATAAGACCACA
AGTTAGTAATCAAACAATTAAGTAGATGTGGAAATAACTTAGAGCATGACAACCGTTTTTTAA
Found at i:22060 original size:36 final size:36
Alignment explanation
Indices: 22020--22089 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
22010 GTTATTGACG
*
22020 AATTAAGTAGATATGACCACATGTTAGTAATCAAAC
1 AATTAAGTAGATATGAACACATGTTAGTAATCAAAC
** *
22056 AATTAAGTAGATATGAACATTTGTTGGTAATCAA
1 AATTAAGTAGATATGAACACATGTTAGTAATCAA
22090 CCCATTCATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (36 bp):
AATTAAGTAGATATGAACACATGTTAGTAATCAAAC
Found at i:24039 original size:271 final size:269
Alignment explanation
Indices: 23553--24084 Score: 762
Period size: 271 Copynumber: 2.0 Consensus size: 269
23543 AATCATATAT
* * *
23553 GCATCTGGTTGGAAACATTGAATACAGAAGTGTTTATGGTTATATTCTCAACTAATATGCAAGGA
1 GCATCTGATTGGAAACATTGAATACAGAAGTGTTTATGGTTATATTCTCAACT-ACATGCAACGA
* * *
23618 AGTTCATTTAGTGCCAGAATATTCATATGTTTTTTTTCTTTTGTTTTGATTTCTAATTCAGTGCT
65 AGTCCATTAAGTGCCAGAATATTCATATGTTTTTTTTCTTTTGTTTTGACTTCTAATTCAGTGCT
*
23683 CCATACAAAATGCTGGGTTGTTGCTGTTTAAAGCTTCAGCCTAACTGAAAGGTCATGTCATTCAC
130 CCATACAAAATGCTGGGTTGTTGCTGTTTAAAGCTTCAGCCTAACTGAAAGGCCATGTCATTCAC
* * * *
23748 CCCATTGTTATTGACATCTTGAAAATGTTCAATGAGCACATGCGTTATGACGACAACACGGCAGG
195 CCCATTGTTATCGACATCTTGAAAATGTTCAACGAACACACGCGTTATGACGACAACACGGCAGG
23813 TGTTGTATTC
260 TGTTGTATTC
** * *
23823 GCATCTGATTGGAAACATTGAATACA-AAGGTGTTTATGGTTATATTCTCTGCT-CGTGCTACGA
1 GCATCTGATTGGAAACATTGAATACAGAA-GTGTTTATGGTTATATTCTCAACTACATGCAACGA
* *
23886 AGTCCATTAAGTGCCAGAATATTCATGTGTTTTTTTTTTAACTTTGTTTTGACTTCTAATTCAGT
65 AGTCCATTAAGTGCCAGAATATTCATATGTTTTTTTTCT---TTTGTTTTGACTTCTAATTCAGT
*
23951 GCTCCATACAAAATGCTGGGTTGTTGTTGTTTAAAGCTTCAGCCTAACTGAAAGGCCATGTCATT
127 GCTCCATACAAAATGCTGGGTTGTTGCTGTTTAAAGCTTCAGCCTAACTGAAAGGCCATGTCATT
* * * * * * * * *
24016 CACGCCATTTTTGTCGCCATCTTGAACATGTTCCACGAACAGACGCGTTTTGACGACAACATGGC
192 CACCCCATTGTTATCGACATCTTGAAAATGTTCAACGAACACACGCGTTATGACGACAACACGGC
24081 AGGT
257 AGGT
24085 ATCATGCTTT
Statistics
Matches: 231, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
268 41 0.18
269 2 0.01
270 47 0.20
271 141 0.61
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (269 bp):
GCATCTGATTGGAAACATTGAATACAGAAGTGTTTATGGTTATATTCTCAACTACATGCAACGAA
GTCCATTAAGTGCCAGAATATTCATATGTTTTTTTTCTTTTGTTTTGACTTCTAATTCAGTGCTC
CATACAAAATGCTGGGTTGTTGCTGTTTAAAGCTTCAGCCTAACTGAAAGGCCATGTCATTCACC
CCATTGTTATCGACATCTTGAAAATGTTCAACGAACACACGCGTTATGACGACAACACGGCAGGT
GTTGTATTC
Found at i:34320 original size:22 final size:22
Alignment explanation
Indices: 34282--34323 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34272 TCATCGACAA
*
34282 TTGGTTGATTTTCGGTGTTGTT
1 TTGGTTGATGTTCGGTGTTGTT
34304 TTGGATTGATGTT-GGTGTTG
1 TTGG-TTGATGTTCGGTGTTG
34324 GTTGCTTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.07, C:0.02, G:0.36, T:0.55
Consensus pattern (22 bp):
TTGGTTGATGTTCGGTGTTGTT
Found at i:37283 original size:32 final size:31
Alignment explanation
Indices: 37247--37323 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
37237 CGGGGCCGTG
*
37247 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
37279 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
37310 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
37324 GTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:37306 original size:63 final size:63
Alignment explanation
Indices: 37200--37323 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
37190 CCCTAAGGGA
* * ** *
37200 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
37263 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
37324 GTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:38223 original size:5 final size:5
Alignment explanation
Indices: 38213--38265 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
38203 AACGGTCAAC
* *
38213 GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG
38262 GGTC
1 GGTC
38266 AGACCGGTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 32 0.80
7 8 0.20
ACGTcount: A:0.08, C:0.23, G:0.51, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:38228 original size:17 final size:17
Alignment explanation
Indices: 38206--38266 Score: 77
Period size: 17 Copynumber: 3.3 Consensus size: 17
38196 AACGGTCAAC
38206 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
38223 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAA----C-GGTCGGGTCG
38245 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
38262 GGTCA
1 GGTCA
38267 GACCGGTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
17 21 0.54
18 1 0.03
21 1 0.03
22 16 0.41
ACGTcount: A:0.11, C:0.23, G:0.48, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:38241 original size:22 final size:22
Alignment explanation
Indices: 38199--38265 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
38189 GAAAGTCAAC
*
38199 GGTCAACGGTCAACGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCG
38223 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
38245 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
38266 AGACCGGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
22 31 0.74
24 11 0.26
ACGTcount: A:0.12, C:0.24, G:0.46, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:38308 original size:10 final size:9
Alignment explanation
Indices: 38262--38350 Score: 79
Period size: 9 Copynumber: 9.3 Consensus size: 9
38252 GGTCGGGTCG
*
38262 GGTCAGACC
1 GGTCAAACC
38271 GGTCAAACC
1 GGTCAAACC
* *
38280 GATTCAGACC
1 G-GTCAAACC
*
38290 GGTCGAACC
1 GGTCAAACC
*
38299 GGTTGAAACC
1 GG-TCAAACC
38309 GGTCAAACC
1 GGTCAAACC
38318 GGTCAGAACC
1 GGTCA-AACC
*
38328 GGTTGAAAACC
1 GG-T-CAAACC
38339 GGTCAAACC
1 GGTCAAACC
38348 GGT
1 GGT
38351 TTCCAGCAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
9 35 0.55
10 21 0.33
11 7 0.11
12 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.28, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:38319 original size:19 final size:19
Alignment explanation
Indices: 38268--38350 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
38258 GTCGGGTCAG
* *
38268 ACCGGTCAAACCGATTCAG
1 ACCGGTCAAACCGGTTCAA
* *
38287 ACCGGTCGAACCGGTTGAA
1 ACCGGTCAAACCGGTTCAA
38306 ACCGGTCAAACCGG-TCAGA
1 ACCGGTCAAACCGGTTCA-A
*
38325 ACCGGTTGAAAACCGG-TCAA
1 ACCGG-T-CAAACCGGTTCAA
38345 ACCGGT
1 ACCGGT
38351 TTCCAGCAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
18 2 0.04
19 35 0.65
20 7 0.13
21 10 0.19
ACGTcount: A:0.30, C:0.29, G:0.27, T:0.14
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCAA
Found at i:38340 original size:30 final size:28
Alignment explanation
Indices: 38287--38350 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 28
38277 ACCGATTCAG
38287 ACCGGTCGAACCGGTTGAAACCGGTCAA
1 ACCGGTCGAACCGGTTGAAACCGGTCAA
38315 ACCGGTCAGAACCGGTTGAAAACCGGTCAA
1 ACCGGTC-GAACCGGTTG-AAACCGGTCAA
38345 ACCGGT
1 ACCGGT
38351 TTCCAGCAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 7 0.21
29 10 0.29
30 17 0.50
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (28 bp):
ACCGGTCGAACCGGTTGAAACCGGTCAA
Found at i:38349 original size:20 final size:21
Alignment explanation
Indices: 38313--38351 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38303 GAAACCGGTC
38313 AAACCGGTCAGAACCGGTTGA
1 AAACCGGTCAGAACCGGTTGA
38334 AAACCGGTCA-AACCGGTT
1 AAACCGGTCAGAACCGGTT
38352 TCCAGCAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.26, G:0.26, T:0.15
Consensus pattern (21 bp):
AAACCGGTCAGAACCGGTTGA
Found at i:44616 original size:32 final size:31
Alignment explanation
Indices: 44580--44656 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
44570 CGGGGCCGTG
*
44580 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
44612 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
44643 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
44657 GTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:44639 original size:63 final size:63
Alignment explanation
Indices: 44533--44656 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
44523 CCCTAAGGGA
* * ** *
44533 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
44596 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
44657 GTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:45568 original size:22 final size:22
Alignment explanation
Indices: 45540--45582 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
45530 AACGGTCAAC
45540 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
45562 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
45583 AGACCGGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.23, G:0.49, T:0.19
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:45597 original size:9 final size:9
Alignment explanation
Indices: 45579--45677 Score: 90
Period size: 9 Copynumber: 10.3 Consensus size: 9
45569 GGTCGGGTCG
*
45579 GGTCAGACC
1 GGTCAAACC
45588 GGTCAAACC
1 GGTCAAACC
* *
45597 GATTCAGACC
1 G-GTCAAACC
45607 GGTCAAACC
1 GGTCAAACC
*
45616 GGTTCGAACC
1 GG-TCAAACC
*
45626 GGTTGAAACC
1 GG-TCAAACC
45636 GGTCAAACC
1 GGTCAAACC
45645 GGTCAGAACC
1 GGTCA-AACC
*
45655 GGTTGAAAACC
1 GG-T-CAAACC
45666 GGTCAAACC
1 GGTCAAACC
45675 GGT
1 GGT
45678 TTCCAGCAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
9 36 0.49
10 30 0.41
11 7 0.09
12 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:45603 original size:19 final size:19
Alignment explanation
Indices: 45581--45678 Score: 101
Period size: 19 Copynumber: 5.1 Consensus size: 19
45571 TCGGGTCGGG
*
45581 TCAGACCGGTCAAACCGAT
1 TCAGACCGGTCAAACCGGT
45600 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
45619 TC-GAACCGGTTGAAACCGG-
1 TCAG-ACCGG-TCAAACCGGT
*
45638 TCAAACCGGTCAGAACCGGT
1 TCAGACCGGTCA-AACCGGT
* *
45658 TGAAAACCGGTCAAACCGGT
1 T-CAGACCGGTCAAACCGGT
45678 T
1 T
45679 TCCAGCAGCC
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.04
19 38 0.56
20 17 0.25
21 10 0.15
ACGTcount: A:0.30, C:0.29, G:0.26, T:0.16
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:45636 original size:29 final size:31
Alignment explanation
Indices: 45604--45678 Score: 129
Period size: 29 Copynumber: 2.5 Consensus size: 31
45594 ACCGATTCAG
45604 ACCGGTCAAACCGGTTC-GAACCGGTTG-AA
1 ACCGGTCAAACCGGTTCAGAACCGGTTGAAA
45633 ACCGGTCAAACCGG-TCAGAACCGGTTGAAA
1 ACCGGTCAAACCGGTTCAGAACCGGTTGAAA
45663 ACCGGTCAAACCGGTT
1 ACCGGTCAAACCGGTT
45679 TCCAGCAGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 2 0.05
29 24 0.56
30 16 0.37
31 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.16
Consensus pattern (31 bp):
ACCGGTCAAACCGGTTCAGAACCGGTTGAAA
Found at i:48859 original size:16 final size:15
Alignment explanation
Indices: 48838--48867 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
48828 TTAAATAATT
48838 ATAATACAAAAAAATA
1 ATAATA-AAAAAAATA
48854 ATAATAAAAAAAAT
1 ATAATAAAAAAAAT
48868 CTTTCATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAATAAAAAAAATA
Found at i:51691 original size:42 final size:42
Alignment explanation
Indices: 51581--51668 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
51571 GTGGAGGTGG
*
51581 AGAAGAGGCTCGACCAGGTGATGACTCCGGGTGTCGAGCTAT
1 AGAAGAGGCTCGACCAGGTGATGGCTCCGGGTGTCGAGCTAT
*
51623 AGAAGAGGCTCGACCAGGTGATGGCTCCGGTTGTCGAGCTAT
1 AGAAGAGGCTCGACCAGGTGATGGCTCCGGGTGTCGAGCTAT
51665 AGAA
1 AGAA
51669 TCGGCCTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.19
Consensus pattern (42 bp):
AGAAGAGGCTCGACCAGGTGATGGCTCCGGGTGTCGAGCTAT
Found at i:53553 original size:22 final size:22
Alignment explanation
Indices: 53526--53576 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
53516 GATGGAGATA
53526 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
* *
53548 GACGGATTTTGTCGGAGATTGG
1 GACGGATTTCGTCGGAGATGGG
*
53570 GATGGAT
1 GACGGAT
53577 GTCGCCGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.10, G:0.43, T:0.27
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:53718 original size:20 final size:20
Alignment explanation
Indices: 53690--53783 Score: 116
Period size: 20 Copynumber: 4.7 Consensus size: 20
53680 TAATATTGTG
*
53690 TTTCACGTTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
53710 TTTCGCGTTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
*
53730 TTTCGCGTTGAGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
* * * *
53750 TATCGCGTTGTGGATTTGGAA
1 TTTCGCGTTGCGAATTT-GAC
*
53771 TATCGCGTTGCGA
1 TTTCGCGTTGCGA
53784 TTTACATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
20 52 0.80
21 13 0.20
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.38
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTGAC
Found at i:53840 original size:20 final size:20
Alignment explanation
Indices: 53695--53848 Score: 100
Period size: 20 Copynumber: 7.7 Consensus size: 20
53685 TTGTGTTTCA
**
53695 CGTTGCGAATTTGACTTTCG
1 CGTTGCGAATTTGAAATTCG
**
53715 CGTTGCGAATTTGACTTTCG
1 CGTTGCGAATTTGAAATTCG
* *
53735 CGTTGAGAATTTG-ACTATCG
1 CGTTGCGAATTTGAAAT-TCG
* * *
53755 CGTTGTGGATTTGGAATATCG
1 CGTTGCGAATTTGAAAT-TCG
*
53776 CGTTGCG-ATTT-ACATATTAG
1 CGTTGCGAATTTGA-A-ATTCG
* * *
53796 CGTTGAGAAATTGAAA-ACTG
1 CGTTGCGAATTTGAAATTC-G
* *
53816 GGTTGCGAAATTGAAATTCG
1 CGTTGCGAATTTGAAATTCG
53836 CGTTGCGAATTTG
1 CGTTGCGAATTTG
53849 TTGGTCATTT
Statistics
Matches: 108, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.01
20 87 0.81
21 19 0.18
22 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (20 bp):
CGTTGCGAATTTGAAATTCG
Found at i:65913 original size:14 final size:14
Alignment explanation
Indices: 65864--65916 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
65854 TGATTTTGTA
65864 AAAAATTATATTTTT
1 AAAAATTAT-TTTTT
* * *
65879 TAAAATCATTTGTT
1 AAAAATTATTTTTT
*
65893 -GAAATTATTTTTT
1 AAAAATTATTTTTT
65906 AAAAATTATTT
1 AAAAATTATTT
65917 ATTATAAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
13 10 0.33
14 13 0.43
15 7 0.23
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (14 bp):
AAAAATTATTTTTT
Found at i:65925 original size:28 final size:28
Alignment explanation
Indices: 65866--65919 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
65856 ATTTTGTAAA
* *
65866 AAATTATATTTTTTAAAATCATTTGTTG
1 AAATTATATTTTTAAAAATCATTTATTG
*
65894 AAATTAT-TTTTTAAAAATTATTTATT
1 AAATTATATTTTTAAAAATCATTTATT
65920 ATAAATATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (28 bp):
AAATTATATTTTTAAAAATCATTTATTG
Found at i:73469 original size:24 final size:24
Alignment explanation
Indices: 73437--73489 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
73427 AAACTTTAAA
73437 ATGGAAAATCTATGTGCTTACTCC
1 ATGGAAAATCTATGTGCTTACTCC
73461 ATGGAAAATCTATGTGCTTACTCC
1 ATGGAAAATCTATGTGCTTACTCC
73485 ATGGA
1 ATGGA
73490 TTACTCAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (24 bp):
ATGGAAAATCTATGTGCTTACTCC
Found at i:77635 original size:37 final size:35
Alignment explanation
Indices: 77594--77662 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
77584 ATATTGTATA
77594 ATTTATTGAAA-TAAAAATAGTATAAATTATATTAATT
1 ATTTATT-AAAGTAAAAAT-GT-TAAATTATATTAATT
* *
77631 ATTTATTAAAGTAATAATGTTATATTATATTA
1 ATTTATTAAAGTAAAAATGTTAAATTATATTA
77663 GAAATATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 11 0.38
36 5 0.17
37 13 0.45
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (35 bp):
ATTTATTAAAGTAAAAATGTTAAATTATATTAATT
Found at i:85637 original size:112 final size:110
Alignment explanation
Indices: 85438--85659 Score: 277
Period size: 112 Copynumber: 2.0 Consensus size: 110
85428 CGATTCTCCT
* * * *
85438 ATGTAAGATTAGTTTTCGCAAACAATACTTTCGCATAACCTCTTTGTAGTAGAACCCTGAAAGAA
1 ATGTAAGATTAGTTTTCACAAACAATACTTTCACAGAACCTCTTTATAGTAGAACCCTGAAAGAA
* * *
85503 CATCTCTAGAGGTAGGACCTCAAACTCCTGACACT-CTTTGAGGAG
66 CAACTCTAGAAGTAGGACCTCAAACGCCTGACACTGC-TTGAGGAG
* * **
85548 ATGTAAGATTAGTTTTCACTTAACAATACTTTTACAGAATTTCTTTATAGTAGAAACCCTGAAAG
1 ATGTAAGATTAGTTTTCAC-AAACAATACTTTCACAGAACCTCTTTATAGTAG-AACCCTGAAAG
* *
85613 AACAACT-TTGAAAGTAGGATCTCAAACGCCTGACACTGCTTGAGGAG
64 AACAACTCTAG-AAGTAGGACCTCAAACGCCTGACACTGCTTGAGGAG
85660 TGGTGATTTC
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
110 18 0.19
111 28 0.29
112 48 0.51
113 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (110 bp):
ATGTAAGATTAGTTTTCACAAACAATACTTTCACAGAACCTCTTTATAGTAGAACCCTGAAAGAA
CAACTCTAGAAGTAGGACCTCAAACGCCTGACACTGCTTGAGGAG
Found at i:87107 original size:2 final size:2
Alignment explanation
Indices: 87100--87135 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
87090 TCTCTTCTTT
87100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87136 CAATTTTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:87726 original size:105 final size:104
Alignment explanation
Indices: 87545--87751 Score: 342
Period size: 105 Copynumber: 2.0 Consensus size: 104
87535 GTTGAAAACC
* *
87545 TTTGGAATCCTTGTAGGCCATGTTTTACAGCTTCTCTTCCATCTTTGAATAGAGATGGAGAATAA
1 TTTGGAATCCTTGTAGGCCATGTTTTAAAGCTTCTCTTCCATCATTGAATAGAGATGGAGAATAA
*
87610 AAGAAGTTCAAATTTATTTTAACTTTTGGGTTTTTTTTT
66 AAGAAGTTCAAATTTATTTTAACTTTTGGGATTTTTTTT
* * *
87649 TTTGGAATCTTTGTAGGCCATGTTTTAGAAGCTTCTCTTTCATCATTGAATATAGATGGAGAATA
1 TTTGGAATCCTTGTAGGCCATGTTTTA-AAGCTTCTCTTCCATCATTGAATAGAGATGGAGAATA
*
87714 AAAGAAGTTCAAATTTATTTTAGCTTTTGGGATTTTTT
65 AAAGAAGTTCAAATTTATTTTAACTTTTGGGATTTTTT
87752 CCCAATAGGC
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
104 26 0.27
105 69 0.73
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (104 bp):
TTTGGAATCCTTGTAGGCCATGTTTTAAAGCTTCTCTTCCATCATTGAATAGAGATGGAGAATAA
AAGAAGTTCAAATTTATTTTAACTTTTGGGATTTTTTTT
Done.