genome.fa.s7058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007058.1 Hibiscus syriacus cultivar Beakdansim tig00018312_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64206

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019--2048	11	2.6	11	94	5	51	33	0	3	63	1.11
3899--3930	5	6.8	5	86	13	50	21	0	0	78	0.76
3899--3930	9	3.4	9	91	8	55	21	0	0	78	0.76
9477--9682	105	2.0	104	87	2	297	27	11	13	47	1.78
9924--9980	29	1.9	29	85	3	78	33	0	3	63	1.12
10133--10189	24	2.3	23	80	11	60	36	1	10	50	1.47
11996--12037	2	21.0	2	100	0	84	50	0	0	50	1.00
12041--12072	14	2.3	14	100	0	64	46	6	6	40	1.54
15115--15157	20	2.2	20	86	0	59	25	6	9	58	1.54
15590--15627	18	2.1	18	90	0	58	55	5	7	31	1.51
15681--15757	33	2.3	33	80	10	86	53	5	3	37	1.42
15488--15851	192	1.9	191	88	3	545	48	7	6	37	1.56
20568--20607	21	2.0	21	85	9	57	30	20	22	27	1.98
20652--20714	20	3.2	20	84	2	83	34	20	9	34	1.85
27708--27756	16	3.1	16	85	5	55	36	2	8	53	1.43
28770--28906	20	6.8	20	93	1	213	37	15	19	27	1.92
29738--29791	24	2.2	24	93	0	90	20	18	20	40	1.91
29981--30016	14	2.5	14	90	4	54	50	22	22	5	1.70
32031--32069	6	6.5	6	81	0	51	53	30	0	15	1.42
32031--32069	18	2.2	18	95	0	69	53	30	0	15	1.42
32126--32395	140	1.9	140	97	0	513	28	12	15	42	1.84
32366--32570	20	10.8	20	74	13	173	34	22	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32374--32531	54	2.9	53	84	4	199	35	24	18	22	1.96
32433--32611	94	1.9	94	89	2	279	34	22	18	24	1.96
32614--32672	20	3.0	20	92	0	91	8	16	22	52	1.70
32786--32847	14	4.3	14	77	6	61	46	14	0	38	1.45
34253--34363	42	2.6	42	81	5	127	22	17	36	23	1.94
34844--34889	20	2.4	19	89	7	67	39	28	17	15	1.90
34933--35000	20	3.4	20	83	0	82	19	16	25	39	1.91
35137--35186	18	2.8	18	100	0	100	42	6	20	32	1.76
36857--36924	20	3.5	20	83	2	84	50	22	14	13	1.77
37306--37352	22	2.1	22	92	0	76	21	17	38	23	1.93
37532--37626	20	4.8	20	79	6	86	24	22	23	30	1.99
39194--39219	2	13.0	2	100	0	52	50	0	0	50	1.00
45226--45275	21	2.4	21	76	6	57	26	4	20	50	1.66
49571--49652	41	2.0	41	100	0	164	39	17	12	31	1.86
50062--50136	17	4.4	17	70	20	57	49	0	2	48	1.15
50055--50163	36	3.0	37	81	10	109	47	0	2	49	1.15
50059--50177	19	6.5	19	71	22	78	47	0	3	49	1.18
50099--50145	23	2.0	22	84	15	60	55	0	0	44	0.99
50375--50496	47	2.5	47	85	4	145	39	7	7	45	1.60
50738--50783	21	2.2	21	100	0	92	45	4	8	41	1.55
54384--54410	13	2.1	13	100	0	54	48	0	22	29	1.51
55495--55553	28	2.1	27	84	3	73	33	13	20	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55677--55723	24	2.0	24	84	16	62	23	19	21	36	1.95
60297--60361	3	22.0	3	87	9	98	32	1	0	66	1.01
60560--60618	22	2.7	22	97	0	109	25	28	22	23	1.99
62042--62069	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!