genome.fa.s706.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000706.1 Hibiscus syriacus cultivar Beakdansim tig00001372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103608

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2016--2049	13	2.6	13	95	0	59	55	11	0	32	1.36
2119--2164	23	2.0	23	91	0	74	23	15	28	32	1.95
10573--10622	21	2.3	22	80	19	61	66	0	6	28	1.15
10582--10621	21	1.9	21	90	10	64	65	0	5	30	1.14
18042--18232	53	3.6	53	92	2	296	21	25	21	31	1.98
18717--18923	42	4.9	42	88	4	292	31	22	19	26	1.98
18691--19055	84	4.2	84	77	9	358	31	21	18	28	1.97
18732--18921	20	9.2	19	66	19	85	31	23	20	25	1.98
18911--18935	13	1.9	13	100	0	50	24	20	24	32	1.98
18856--19184	134	2.4	135	86	3	439	30	19	17	31	1.95
19045--19069	13	1.9	13	100	0	50	24	20	24	32	1.98
23604--23642	6	6.3	6	91	5	60	53	15	12	17	1.72
23604--23642	19	2.1	18	90	4	60	53	15	12	17	1.72
33248--33635	146	2.6	144	85	4	485	29	11	21	36	1.89
35458--35611	31	5.0	31	93	1	256	37	20	20	22	1.95
35790--35836	23	2.0	24	91	4	78	34	21	0	44	1.52
36355--36400	21	2.2	21	88	0	65	15	26	28	30	1.96
38370--38435	28	2.4	28	94	0	114	48	12	0	39	1.40
48400--48428	11	2.6	11	100	0	58	31	17	13	37	1.89
48691--49081	185	2.1	185	90	2	617	44	8	3	42	1.53
49209--49241	15	2.3	14	94	5	57	15	12	30	42	1.83
55382--55430	19	2.6	19	90	0	71	32	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58113--58174	22	2.7	22	85	7	70	70	6	14	8	1.30
66909--66954	24	1.9	24	86	0	65	32	32	0	34	1.58
66923--66954	13	2.6	13	90	9	50	34	31	0	34	1.58
70369--70426	24	2.4	24	85	2	71	17	37	13	31	1.89
70385--70433	24	2.0	24	92	0	80	16	28	18	36	1.92
82523--82720	42	4.7	42	78	5	177	28	14	19	37	1.90
82523--82660	43	3.2	42	79	10	138	28	15	18	37	1.91
82903--82971	27	2.6	27	90	2	104	42	11	14	31	1.82
85220--85254	12	3.0	12	87	4	54	11	14	8	65	1.46
89065--89101	2	18.5	2	100	0	74	48	0	0	51	1.00
89567--89604	13	2.9	13	92	0	58	36	31	10	21	1.87
91413--91451	15	2.6	15	95	0	69	23	0	53	23	1.46
91398--91458	21	3.2	21	68	29	55	24	0	52	22	1.47
94471--94595	44	2.8	44	81	2	144	48	22	18	10	1.78

Tables:   1

The End!