Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007061.1 Hibiscus syriacus cultivar Beakdansim tig00018328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58198

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3322--3564
52
4.8
52
82
7
266
29
20
28
21
1.98
4821--4870
19
2.7
18
87
6
82
8
10
18
64
1.48
5193--5227
2
17.5
2
100
0
70
48
0
0
51
1.00
6261--6357
40
2.3
43
82
8
130
28
15
31
23
1.95
6420--6749
130
2.6
129
84
6
413
24
18
32
23
1.97
6836--6941
34
3.2
34
93
5
173
33
10
24
32
1.89
6971--7146
66
2.8
63
84
10
209
42
13
14
30
1.84
7217--7285
32
2.2
32
84
5
86
34
23
13
28
1.92
12894--13018
59
2.1
59
81
14
143
59
11
11
18
1.60
13015--13098
30
2.8
30
81
12
102
57
9
15
17
1.64
15453--15526
30
2.5
30
82
12
98
62
9
13
14
1.55
18499--18564
30
2.2
30
88
0
96
50
16
12
21
1.77
18500--18576
30
2.7
29
82
7
95
48
16
11
23
1.79
19845--19882
19
2.1
19
85
9
53
47
0
0
52
1.00
19831--19880
20
2.3
21
81
18
59
50
2
2
46
1.24
20314--20369
28
2.0
28
100
0
112
35
17
28
17
1.93
20821--20865
16
2.8
16
82
3
54
42
2
0
55
1.12
21191--21227
16
2.3
16
85
0
56
45
13
0
40
1.43
22000--22041
2
21.0
2
100
0
84
50
0
0
50
1.00
23938--24081
14
10.4
14
65
17
61
49
0
0
50
1.05
23981--24079
42
2.5
39
79
18
114
46
1
0
52
1.07
24024--24082
9
6.0
10
79
16
54
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24036--24092
29
2.0
29
86
6
80
52
0
0
47
1.00
23972--24079
21
5.2
21
69
20
77
46
0
0
52
1.06
39965--40019
27
2.0
27
92
0
92
34
20
9
36
1.84
43011--43037
3
9.0
3
100
0
54
66
0
0
33
0.92
46698--46750
19
2.8
19
82
0
70
30
26
15
28
1.96

Tables:   1

The End!