genome.fa.s7062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007062.1 Hibiscus syriacus cultivar Beakdansim tig00018336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75399

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3000--3035	16	2.2	17	90	5	56	61	5	22	11	1.50
3986--4031	21	2.1	21	84	4	56	15	10	4	69	1.32
5272--5818	182	3.0	181	88	2	776	42	13	16	27	1.86
7632--7666	15	2.2	16	90	5	54	25	31	17	25	1.97
10162--10217	24	2.3	24	84	0	67	19	14	14	51	1.75
10179--10270	24	3.8	24	80	5	96	20	11	17	50	1.78
10179--10270	48	1.9	48	81	0	112	20	11	17	50	1.78
12281--12312	13	2.5	13	94	0	55	18	43	18	18	1.88
12304--12355	13	3.8	13	76	14	50	11	32	26	28	1.91
12311--12342	16	2.0	16	93	0	55	9	37	28	25	1.87
12304--12347	23	1.9	23	86	9	63	11	34	27	27	1.91
12954--13062	24	4.5	24	83	4	121	18	11	15	54	1.71
19174--20518	199	6.8	199	87	0	1863	39	13	14	32	1.85
22009--22060	6	8.7	6	83	8	52	46	3	28	21	1.69
23434--23485	24	2.2	24	89	6	79	28	5	13	51	1.64
23445--23497	24	2.2	24	86	0	70	33	3	13	49	1.60
25035--26176	199	5.8	199	86	3	1482	38	13	15	32	1.87
25041--26176	397	2.9	394	87	3	1525	38	13	15	32	1.87
28458--28507	23	2.2	23	88	0	73	32	16	12	40	1.84
28312--28853	158	3.4	158	93	0	913	32	14	12	40	1.84
28606--28665	23	2.6	23	83	0	84	35	18	6	40	1.77
28764--28814	23	2.2	23	89	0	75	31	21	9	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28851--28901	23	2.2	23	89	0	75	33	17	11	37	1.86
28756--28923	87	1.9	87	93	2	293	32	14	13	39	1.85
37547--37589	17	2.5	17	84	0	50	34	13	16	34	1.88
46845--46992	32	4.6	32	75	5	129	33	14	20	31	1.93
46839--46960	64	1.9	64	83	3	156	34	13	18	33	1.90
48540--48600	32	1.9	32	86	0	86	44	11	9	34	1.74
48572--48664	40	2.3	41	81	5	116	38	6	15	39	1.73
48595--48684	40	2.2	40	82	4	99	42	5	14	37	1.69
53485--53526	20	2.1	20	100	0	84	19	9	21	50	1.75
53694--53755	20	2.9	21	80	7	72	17	25	30	25	1.97
57556--57595	21	1.9	21	89	0	62	37	7	2	52	1.43
60287--60329	21	2.0	21	100	0	86	39	13	9	37	1.78
60913--61134	115	1.9	116	89	5	351	28	14	20	36	1.92
61110--61139	16	1.9	16	93	6	53	3	20	30	46	1.66
62287--62583	131	2.3	130	84	0	378	41	15	10	33	1.80
64574--64612	3	13.0	3	89	10	62	66	0	0	33	0.92
64808--65118	134	2.3	134	83	2	392	30	14	21	33	1.94
65055--65139	41	2.1	41	88	0	125	27	20	21	31	1.97
64929--65274	175	2.0	175	82	1	424	30	16	19	33	1.94
65096--65566	134	3.5	134	84	2	556	28	17	21	32	1.96
64798--65387	309	1.9	309	82	2	738	30	16	20	32	1.95
65870--65937	20	3.4	19	70	20	57	38	20	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65853--65956	41	2.5	40	83	6	118	36	21	16	25	1.94
65871--66903	232	4.5	232	81	5	1193	35	17	15	32	1.91
66793--66879	41	2.1	41	85	6	113	32	20	20	26	1.97
73601--73966	128	2.8	131	82	3	445	42	15	10	31	1.81

Tables:   1

The End!