Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007063.1 Hibiscus syriacus cultivar Beakdansim tig00018345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123613

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1526--1557
2
16.0
2
93
0
55
50
3
0
46
1.17
3961--4034
28
2.6
29
89
4
105
40
8
12
39
1.72
9254--9384
60
2.2
58
84
9
167
34
20
5
39
1.75
9254--9415
60
2.7
60
80
3
141
31
22
6
40
1.78
9605--9729
60
2.1
60
82
7
148
46
2
16
34
1.61
13949--14018
31
2.3
31
97
2
133
38
14
21
25
1.91
14124--14194
2
36.0
2
97
2
135
50
0
0
49
1.00
21752--21782
2
15.5
2
100
0
62
48
0
0
51
1.00
24484--24561
38
2.1
38
88
9
115
21
12
8
56
1.64
35941--35996
21
2.7
21
80
0
67
28
26
19
25
1.99
36465--36580
39
2.9
41
78
7
114
28
13
18
39
1.89
36447--36542
40
2.3
41
80
7
106
26
12
19
41
1.87
36618--36776
41
3.9
41
77
12
141
32
13
17
36
1.89
38540--38622
29
2.8
29
92
1
139
43
9
14
32
1.78
43307--43389
29
2.8
29
92
1
139
43
9
14
32
1.78
46295--46364
21
3.3
21
87
0
104
22
5
20
51
1.68
46676--46767
42
2.2
43
84
2
114
34
17
16
31
1.92
51906--51963
27
2.1
27
90
0
89
25
18
5
50
1.68
51901--51970
27
2.4
29
79
13
81
24
20
7
48
1.74
51929--52031
46
2.2
47
84
10
131
20
21
6
51
1.70
51944--52201
48
5.4
46
73
18
161
16
22
7
53
1.67
52171--52237
27
2.5
27
85
4
91
16
25
7
50
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52210--52492
46
6.0
47
77
9
238
18
22
8
50
1.73
52210--52492
94
3.0
92
82
10
299
18
22
8
50
1.73
61690--61814
60
2.1
60
80
3
135
48
3
5
43
1.42
63838--63901
29
2.2
29
97
0
119
48
10
10
29
1.73
70936--71019
30
2.7
32
74
9
84
45
2
14
38
1.58
84782--84829
20
2.4
21
76
13
57
47
4
4
43
1.41
88732--88781
25
2.0
25
88
7
75
32
12
10
46
1.74
92313--92353
16
2.6
16
85
11
57
56
4
4
34
1.42
93466--93525
30
2.0
30
93
6
104
43
10
15
31
1.79
93777--93801
3
8.3
3
100
0
50
32
0
0
68
0.90
95674--95796
31
4.0
31
95
2
212
19
19
22
38
1.94
100036--100158
31
4.0
31
95
2
212
19
19
22
38
1.94
101571--101658
24
3.6
24
80
8
115
18
13
7
60
1.57
101595--101671
24
3.1
25
76
12
95
20
14
5
59
1.54
101570--101671
49
2.1
50
96
1
188
20
13
6
58
1.58
101580--101687
49
2.2
48
88
6
155
22
16
4
56
1.58
107795--107821
4
6.8
4
100
0
54
22
0
25
51
1.48
116956--117118
54
3.0
54
95
0
281
24
15
30
30
1.95
117035--117139
17
5.7
20
71
14
66
27
12
29
30
1.93
120078--120120
21
2.0
22
90
4
70
76
0
9
13
1.01
120719--120864
58
2.5
59
85
5
201
28
15
26
30
1.96

Tables:   1

The End!